- Author:
- David Nickerson <nickerso@users.sourceforge.net>
- Date:
- 2011-06-21 15:56:12+12:00
- Desc:
- adding a standalone version of the SED-ML document for this example, updating to pass validation using Frank's new web tools
- Permanent Source URI:
- https://models.cellml.org/workspace/a1/rawfile/1e62f9a11a1b467aff7bc1ddd0b4fc8ac3f052c0/models/1977_beeler/experiments/periodic-stimulus.xml
<?xml version="1.0"?>
<model xmlns="http://www.cellml.org/cellml/1.1#" name="BR_experiment_model" xmlns:cmeta="http://www.cellml.org/metadata/1.0#" cmeta:id="BR_experiment_model">
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:cmeta="http://www.cellml.org/metadata/1.0#" xmlns:bqs="http://www.cellml.org/bqs/1.0#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:cs="http://www.cellml.org/metadata/simulation/1.0#">
<rdf:Description rdf:about="">
<dc:creator rdf:parseType="Resource">
<vCard:N rdf:parseType="Resource">
<vCard:Family>Nickerson</vCard:Family>
<vCard:Given>David</vCard:Given>
</vCard:N>
<vCard:EMAIL rdf:parseType="Resource">
<rdf:value>d.nickerson@auckland.ac.nz</rdf:value>
<rdf:type rdf:resource="http://imc.org/vCard/3.0#internet"/>
</vCard:EMAIL>
<vCard:ORG rdf:parseType="Resource">
<vCard:Orgname>The University of Auckland</vCard:Orgname>
<vCard:Orgunit>Bioengineering Institute</vCard:Orgunit>
</vCard:ORG>
</dc:creator>
<dcterms:created rdf:parseType="Resource">
<dcterms:W3CDTF>2009-06-21</dcterms:W3CDTF>
</dcterms:created>
<dc:publisher>
Bioengineering Institute, The University of Auckland
</dc:publisher>
</rdf:Description>
<rdf:Description about="#BR_experiment_model">
<cs:simulation>
<rdf:Description rdf:ID="simulation">
<cs:multistepMethod>bdf</cs:multistepMethod>
<cs:iterationMethod>functional</cs:iterationMethod>
<cs:boundIntervals rdf:parseType="Collection">
<rdf:Description>
<cs:boundVariable>
<rdf:Description rdf:about="#time"/>
</cs:boundVariable>
<cs:maximumStepSize rdf:datatype="http://www.w3.org/2001/XMLSchema#double">
0.1
</cs:maximumStepSize>
<cs:tabulationStepSize rdf:datatype="http://www.w3.org/2001/XMLSchema#double">
0.5
</cs:tabulationStepSize>
<cs:startingValue rdf:datatype="http://www.w3.org/2001/XMLSchema#double">
0
</cs:startingValue>
<cs:endingValue rdf:datatype="http://www.w3.org/2001/XMLSchema#double">
1500
</cs:endingValue>
</rdf:Description>
</cs:boundIntervals>
</rdf:Description>
</cs:simulation>
</rdf:Description>
</rdf:RDF>
<import xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="../model.xml">
<component component_ref="interface" name="model"/>
</import>
<import xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="../../protocols/periodic-IStim.xml">
<component name="stimulus_protocol" component_ref="stimulus_protocol"/>
</import>
<component name="stimulus_parameters" cmeta:id="stimulus_parameters">
<variable name="stimPeriod" public_interface="out" private_interface="out" initial_value="500.0" units="ms"/>
<variable name="stimDuration" public_interface="out" private_interface="out" initial_value="2.0" units="ms"/>
<variable name="stimCurrent" public_interface="out" private_interface="out" initial_value="64.8" units="uA_per_mmcu"/>
<variable name="Am" public_interface="out" private_interface="out" initial_value="200" units="per_mm"/>
</component>
<connection>
<map_components component_1="stimulus_protocol" component_2="stimulus_parameters"/>
<map_variables variable_1="stimPeriod" variable_2="stimPeriod"/>
<map_variables variable_1="stimDuration" variable_2="stimDuration"/>
<map_variables variable_1="stimCurrent" variable_2="stimCurrent"/>
<map_variables variable_1="Am" variable_2="Am"/>
</connection>
<connection>
<map_components component_1="stimulus_protocol" component_2="time"/>
<map_variables variable_1="time" variable_2="time"/>
</connection>
<connection>
<map_components component_1="model" component_2="stimulus_protocol"/>
<map_variables variable_1="Istim" variable_2="IStim"/>
</connection>
<component name="exposed_variables" cmeta:id="exposed_variables_component">
<variable name="Vm" cmeta:id="Vm" public_interface="in" units="mV"/>
</component>
<connection>
<map_components component_1="model" component_2="exposed_variables"/>
<map_variables variable_1="V" variable_2="Vm"/>
</connection>
<component name="time" cmeta:id="time_component">
<rdf:RDF
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:cmeta="http://www.cellml.org/metadata/1.0#">
<rdf:Description rdf:about="#time_component">
<cmeta:comment rdf:parseType="Resource">
<rdf:value>
The actual definition of the time variable.
</rdf:value>
</cmeta:comment>
</rdf:Description>
</rdf:RDF>
<variable name="time" cmeta:id="time" initial_value="0.0" public_interface="out" units="ms"/>
</component>
<connection>
<map_components component_1="model" component_2="time"/>
<map_variables variable_1="time" variable_2="time"/>
</connection>
<import xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="../model.xml">
<units name="ms" units_ref="ms"/>
<units name="per_ms" units_ref="per_ms"/>
<units name="mV" units_ref="mV"/>
<units name="per_mV" units_ref="per_mV"/>
<units name="per_mV_ms" units_ref="per_mV_ms"/>
<units name="mS_per_mm2" units_ref="mS_per_mm2"/>
<units name="uF_per_mm2" units_ref="uF_per_mm2"/>
<units name="uA_per_mm2" units_ref="uA_per_mm2"/>
<units name="concentration_units" units_ref="concentration_units"/>
</import>
<import xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="../../common/units.xml">
<units name="per_mm" units_ref="per_mm"/>
<units name="uA_per_mmcu" units_ref="uA_per_mmcu"/>
</import>
<component name="parameters">
<variable name="Iadd" initial_value="0.0" units="uA_per_mm2" public_interface="out"/>
</component>
<connection>
<map_components component_1="model" component_2="parameters"/>
<map_variables variable_1="Iadd" variable_2="Iadd"/>
</connection>
</model>
