- Author:
- David Nickerson <nickerso@users.sourceforge.net>
- Date:
- 2010-05-04 12:35:57+12:00
- Desc:
- adding V to the top level model in order to test out SED-ML L1V1 since need to be able to address variables using xpath
- Permanent Source URI:
- https://models.cellml.org/workspace/a1/rawfile/97774d2a949fcd79c88431867e74a45e459b9d8b/models/1998_fenton/experiments/MBR.xml
<?xml version="1.0"?>
<model xmlns="http://www.cellml.org/cellml/1.1#" name="MBR_experiment_model" xmlns:cmeta="http://www.cellml.org/metadata/1.0#" cmeta:id="MBR_experiment_model">
<rdf:RDF
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:cmeta="http://www.cellml.org/metadata/1.0#"
xmlns:bqs="http://www.cellml.org/bqs/1.0#"
xmlns:dc="http://purl.org/dc/elements/1.1/"
xmlns:dcterms="http://purl.org/dc/terms/"
xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#"
xmlns:cs="http://www.cellml.org/metadata/simulation/1.0#">
<rdf:Description rdf:about="">
<dc:creator rdf:parseType="Resource">
<vCard:N rdf:parseType="Resource">
<vCard:Family>Nickerson</vCard:Family>
<vCard:Given>David</vCard:Given>
</vCard:N>
<vCard:EMAIL rdf:parseType="Resource">
<rdf:value>d.nickerson@auckland.ac.nz</rdf:value>
<rdf:type rdf:resource="http://imc.org/vCard/3.0#internet"/>
</vCard:EMAIL>
<vCard:ORG rdf:parseType="Resource">
<vCard:Orgname>The University of Auckland</vCard:Orgname>
<vCard:Orgunit>Bioengineering Institute</vCard:Orgunit>
</vCard:ORG>
</dc:creator>
<dcterms:created rdf:parseType="Resource">
<dcterms:W3CDTF>2009-06-18</dcterms:W3CDTF>
</dcterms:created>
<dc:publisher>
Bioengineering Institute, The University of Auckland
</dc:publisher>
</rdf:Description>
<rdf:Description rdf:about="#MBR_experiment_model">
<cs:simulation>
<rdf:Description rdf:ID="simulation">
<cs:multistepMethod>bdf</cs:multistepMethod>
<cs:iterationMethod>functional</cs:iterationMethod>
<cs:boundIntervals rdf:parseType="Collection">
<rdf:Description>
<cs:boundVariable>
<rdf:Description rdf:about="periodic-stimulus-generic.xml#time"/>
</cs:boundVariable>
<cs:maximumStepSize rdf:datatype="http://www.w3.org/2001/XMLSchema#double">
0.1
</cs:maximumStepSize>
<cs:tabulationStepSize rdf:datatype="http://www.w3.org/2001/XMLSchema#double">
1.0
</cs:tabulationStepSize>
<cs:startingValue rdf:datatype="http://www.w3.org/2001/XMLSchema#double">
0
</cs:startingValue>
<cs:endingValue rdf:datatype="http://www.w3.org/2001/XMLSchema#double">
1500
</cs:endingValue>
</rdf:Description>
</cs:boundIntervals>
</rdf:Description>
</cs:simulation>
</rdf:Description>
</rdf:RDF>
<import xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="periodic-stimulus-generic.xml">
<component component_ref="interface" name="model"/>
</import>
<component name="parameters" cmeta:id="parameters">
<variable initial_value="0.04" name="g_fi_max" private_interface="out" public_interface="out" units="mS_per_mm2"/>
<variable initial_value="8.3" name="tau_0" private_interface="out" public_interface="out" units="ms"/>
<variable initial_value="50.0" name="tau_r" private_interface="out" public_interface="out" units="ms"/>
<variable initial_value="44.84" name="tau_si" private_interface="out" public_interface="out" units="ms"/>
<variable initial_value="1000.0" name="tau_v1_minus" private_interface="out" public_interface="out" units="ms"/>
<variable initial_value="19.2" name="tau_v2_minus" private_interface="out" public_interface="out" units="ms"/>
<variable initial_value="3.33" name="tau_v_plus" private_interface="out" public_interface="out" units="ms"/>
<variable initial_value="11.0" name="tau_w_minus" private_interface="out" public_interface="out" units="ms"/>
<variable initial_value="667.0" name="tau_w_plus" private_interface="out" public_interface="out" units="ms"/>
<variable initial_value="0.055" name="u_v" private_interface="out" public_interface="out" units="dimensionless"/>
</component>
<connection>
<map_components component_1="model" component_2="parameters"/>
<map_variables variable_1="u_v" variable_2="u_v"/>
<map_variables variable_1="g_fi_max" variable_2="g_fi_max"/>
<map_variables variable_1="tau_v1_minus" variable_2="tau_v1_minus"/>
<map_variables variable_1="tau_v2_minus" variable_2="tau_v2_minus"/>
<map_variables variable_1="tau_v_plus" variable_2="tau_v_plus"/>
<map_variables variable_1="tau_0" variable_2="tau_0"/>
<map_variables variable_1="tau_r" variable_2="tau_r"/>
<map_variables variable_1="tau_si" variable_2="tau_si"/>
<map_variables variable_1="tau_w_minus" variable_2="tau_w_minus"/>
<map_variables variable_1="tau_w_plus" variable_2="tau_w_plus"/>
</connection>
<import xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="../fenton_karma_model_1998_units_model.xml">
<units name="ms" units_ref="ms"/>
<units name="per_ms" units_ref="per_ms"/>
<units name="mV" units_ref="mV"/>
<units name="per_mV" units_ref="per_mV"/>
<units name="per_mV_ms" units_ref="per_mV_ms"/>
<units name="mS_per_mm2" units_ref="mS_per_mm2"/>
<units name="uF_per_mm2" units_ref="uF_per_mm2"/>
<units name="uA_per_mm2" units_ref="uA_per_mm2"/>
<units name="concentration_units" units_ref="concentration_units"/>
</import>
</model>
