- Author:
- mlin865 <mlin865@aucklanduni.ac.nz>
- Date:
- 2024-08-19 17:12:34+12:00
- Desc:
- Add files for mouse small intestine
- Permanent Source URI:
- https://models.cellml.org/workspace/ba2/rawfile/43815ea53fba43f050632775972604ea37bc5e3b/OrganScaffold-settings.json
{
"scaffold_settings": {
"deleteElementRanges": "",
"displayAxes": false,
"displayElementAxes": false,
"displayElementNumbers": false,
"displayLines": true,
"displayLinesExterior": false,
"displayMarkerPoints": false,
"displayModelRadius": false,
"displayNodeDerivativeLabels": [
"D1"
],
"displayNodeDerivativeVersion": 0,
"displayNodeDerivatives": 0,
"displayNodeNumbers": false,
"displayNodePoints": false,
"displaySurfaces": true,
"displaySurfacesExterior": true,
"displaySurfacesTranslucent": false,
"displaySurfacesWireframe": false,
"modelCoordinatesField": "coordinates",
"scaffoldPackage": {
"_ScaffoldPackage": true,
"rotation": [
0.0,
0.0,
0.0
],
"scaffoldSettings": {
"Circular muscle layer relative thickness": 0.25,
"Longitudinal muscle layer relative thickness": 0.05,
"Mucosa relative thickness": 0.55,
"Network layout": {
"_ScaffoldPackage": true,
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"identifierRanges": "1-3",
"name": "duodenum",
"ontId": "UBERON:0002114"
},
{
"_AnnotationGroup": true,
"dimension": 1,
"identifierRanges": "4-43",
"name": "jejunum",
"ontId": "UBERON:0002115"
},
{
"_AnnotationGroup": true,
"dimension": 1,
"identifierRanges": "44-45",
"name": "ileum",
"ontId": "UBERON:0002116"
}
]
},
"Number of elements along segment": 3,
"Number of elements around": 8,
"Number of elements through wall": 1,
"Number of segments": 100,
"Refine": false,
"Refine number of elements along": 1,
"Refine number of elements around": 1,
"Refine number of elements through wall": 1,
"Submucosa relative thickness": 0.15,
"Use cross derivatives": false,
"Use linear through wall": true,
"Wall thickness": 0.1
},
"scaffoldTypeName": "3D Small Intestine 1",
"scale": [
1.0,
1.0,
1.0
],
"translation": [
0.0,
0.0,
0.0
]
}
},
"segmentation_data_settings": {
"displayDataContours": true,
"displayDataMarkerNames": true,
"displayDataMarkerPoints": true,
"displayDataPoints": false,
"displayDataRadius": false
}
}
