- Author:
- Hanne Nielsen <hnie010@aucklanduni.ac.nz>
- Date:
- 2011-01-13 15:54:28+13:00
- Desc:
- Added three xul and session files
- Permanent Source URI:
- https://models.cellml.org/workspace/fujita_toyoshima_uda_ozaki_kubota_kuroda_2010/rawfile/e404cee704e963f2eff00f298ef88cc32bb92998/fujita_2010a.xul
<?xml version="1.0" encoding="utf-8"?>
<?xml-stylesheet href="chrome://global/skin/" type="text/css"?>
<window id="layout-diagram" xmlns="http://www.mozilla.org/keymaster/gatekeeper/there.is.only.xul" style="overflow: auto" onload="setupDocument()">
<script>
<![CDATA[
window.model_entities =
{
EGF: {
id: "EGF",
y: "EGF/EGF",
x: "environment/time",
graph: "Clickable Elements Against Time (s)",
colour: "#ff9900",
linestyle: "none"
},
EGFR: {
id: "EGFR",
y: "EGFR/EGFR",
x: "environment/time",
graph: "Clickable Elements Against Time (s)",
colour: "#ff00cc",
linestyle: "none"
},
pro_EGFR: {
id: "pro_EGFR",
y: "pro_EGFR/pro_EGFR",
x: "environment/time",
graph: "Clickable Elements Against Time (s)",
colour: "#ffcccc",
linestyle: "none"
},
EGF_EGFR: {
id: "EGF_EGFR",
y: "EGF_EGFR/EGF_EGFR",
x: "environment/time",
graph: "Clickable Elements Against Time (s)",
colour: "#ccffff",
linestyle: "none"
},
pEGFR: {
id: "pEGFR",
y: "pEGFR/pEGFR",
x: "environment/time",
graph: "Clickable Elements Against Time (s)",
colour: "#ccff66",
linestyle: "none"
},
Akt: {
id: "Akt",
y: "Akt/Akt",
x: "environment/time",
graph: "Clickable Elements Against Time (s)",
colour: "#ffff33",
linestyle: "none"
},
pAkt: {
id: "pAkt",
y: "pAkt/pAkt",
x: "environment/time",
graph: "Clickable Elements Against Time (s)",
colour: "#ff9900",
linestyle: "none"
},
S6: {
id: "S6",
y: "S6/S6",
x: "environment/time",
graph: "Clickable Elements Against Time (s)",
colour: "#cc00ff",
linestyle: "none"
},
pS6: {
id: "pS6",
y: "pS6/pS6",
x: "environment/time",
graph: "Clickable Elements Against Time (s)",
colour: "#3300ff",
linestyle: "none"
}
// Repeat the above section for each controllable graph trace.
// Remember to add a comma to each repeat after the final },
// except for the final one!
};
function flushVisibilityInformation(entity_id, entity_colour)
{
var message = "";
var entity;
if (typeof pcenv != "undefined")
{
for (var i in window.model_entities)
{
entity = window.model_entities[i];
if (typeof entity_id == "undefined" || entity_id == window.model_entities[i].id)
{
pcenv.selectTrace
(
entity.graph,
entity.x,
entity.y,
typeof entity_colour == "undefined" ? "" : entity_colour,
entity.linestyle
);
}
if (entity.linestyle != "none")
message += i + ", ";
}
pcenv.status(message == "" ? "No fluxes displayed" : "Displaying flux of " + message.slice(0, -2));
}
}
function processSelectEntity(event)
{
if (typeof pcenv != "undefined")
pcenv.status("In processSelectEntity");
var entity = window.model_entities[window.svgIdToName[event.currentTarget.id]];
switch(entity.linestyle)
{
case "none":
entity.linestyle = "lines";
highlightEntity(event.currentTarget.id);
break;
case "lines":
entity.linestyle = "none";
unlightEntity(event.currentTarget.id);
break;
}
flushVisibilityInformation(entity.id);
}
function processContext(event)
{
// if (event.button != 2)
// return true;
var entity = window.model_entities[window.svgIdToName[event.currentTarget.id]];
if (entity.context == null)
return true;
var menu = document.getElementById("entityContextMenu");
for (var c = menu.firstChild, x = null; c != null; c = x)
{
x = c.nextSibling;
menu.removeChild(c);
}
for (var i in entity.context)
{
var item = entity.context[i];
var mitem = document.createElementNS
(
"http://www.mozilla.org/keymaster/gatekeeper/there.is.only.xul",
"menuitem"
);
mitem.setAttribute("label", item.label);
mitem.setAttribute("url", item.url);
mitem.addEventListener("command", processShowEntityURL, false);
menu.appendChild(mitem);
}
menu.showPopup(window.diagram, event.screenX, event.screenY, "context");
event.stopPropagation;
return false;
}
function processShowEntityURL(event)
{
url = event.target.getAttribute("url");
window.open(url);
var hl = document.getElementById("hidden-link");
hl.href = url;
// This is ugly, but it is one way to force everything through the proper
// external handler...
var evt = document.createEvent("HTMLEvents");
evt.initEvent("click", true, true);
hl.dispatchEvent(evt);
}
function highlightEntity(id)
{
for (var path = document.getElementById(id + "_path1"), i = 1; path != null; path = document.getElementById(id + "_path" + ++i))
{
if (!(i in window.model_entities[window.svgIdToName[id]].path_colours))
window.model_entities[window.svgIdToName[id]].path_colours[i] = path.attributes.getNamedItem("stroke").value;
path.attributes.getNamedItem("stroke").value = "#ff0000";
}
}
function highlightEntityOnRollover(event) {
if (window.model_entities[window.svgIdToName[event.currentTarget.id]].colour)
flushVisibilityInformation(event.currentTarget.id, "#ffffff");
if (window.model_entities[window.svgIdToName[event.currentTarget.id]].linestyle == "none")
highlightEntity(event.currentTarget.id);
}
function unlightEntity(id)
{
for (var path = document.getElementById(id + "_path1"), i = 1; path != null; path = document.getElementById(id + "_path" + ++i))
path.attributes.getNamedItem("stroke").value = window.model_entities[window.svgIdToName[id]].path_colours[i];
}
function unlightEntityOnRollover(event) {
if (window.model_entities[window.svgIdToName[event.currentTarget.id]].colour)
flushVisibilityInformation(event.currentTarget.id, window.model_entities[window.svgIdToName[event.currentTarget.id]].colour);
if (window.model_entities[window.svgIdToName[event.currentTarget.id]].linestyle == "none")
unlightEntity(event.currentTarget.id);
}
var mouseDown = false;
var initial_x;
var initial_y;
var viewBox;
function startDrag(event)
{
if (event.button)
return true;
mouseDown = true;
initial_x = parseInt(currentZoom * event.pageX + parseInt(viewBox.value.match(/^-?\d+/)[0]));
initial_y = parseInt(currentZoom * event.pageY + parseInt(viewBox.value.match(/^-?\d+\s+(-?(\d+))/)[1]));
}
function stopDrag(event)
{
if (!event.button)
mouseDown = false;
}
function moveDrag(event)
{
if (mouseDown == true)
viewBox.value = viewBox.value.replace(/^-?\d+\s+-?\d+/, parseInt(initial_x - currentZoom * event.pageX) + " " + parseInt(initial_y - currentZoom * event.pageY));
}
function reset()
{
var zoom_scale = document.getElementById("zoom_scale")
zoom_scale.value = zoom_scale.originalValue;
viewBox.value = viewBox.originalValue;
}
var initialZoom;
var currentZoom = 1;
var initialHeight;
var initialWidth;
function zoomDiagram(event)
{
currentZoom = initialZoom / event.currentTarget.value;
viewBox.value = viewBox.value.replace(/\d+\s+\d+$/, parseInt(initialHeight * currentZoom) + " " + parseInt(initialWidth * currentZoom));
}
function setupDocument()
{
flushVisibilityInformation();
window.diagram = document.getElementById("sachse");
window.svgIdToName = {};
for (var name in window.model_entities)
{
var id = window.model_entities[name].id;
window.model_entities[name].path_colours = [];
var svg = document.getElementById(id);
window.svgIdToName[id] = name;
svg.addEventListener("click", processSelectEntity, false);
svg.addEventListener("contextmenu", processContext, false);
svg.addEventListener("mouseover", highlightEntityOnRollover ,false);
svg.addEventListener("mouseout", unlightEntityOnRollover, false);
}
document.getElementsByTagName("svg")[0].addEventListener("mousedown", startDrag, false);
document.addEventListener("mouseup", stopDrag, false);
document.addEventListener("mousemove", moveDrag, false);
document.getElementById("reset_button").addEventListener("click", reset, false);
document.getElementById("zoom_scale").addEventListener("change", zoomDiagram, false);
document.getElementById("zoom_scale").originalValue = document.getElementById("zoom_scale").value;
viewBox = document.getElementsByTagName("svg")[0].attributes.getNamedItem("viewBox");
viewBox.originalValue = viewBox.value;
initialZoom = document.getElementById("zoom_scale").value;
initialHeight = parseInt(viewBox.value.match(/(\d+)\s+\d+$/)[1]);
initialWidth = parseInt(viewBox.value.match(/\d+$/)[0]);
}
]]>
</script>
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<menupopup id="entityContextMenu" />
</popupset>
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</radialGradient>
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</g>
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