Location: Garmendia-Torres, Goldbeter and Jacquet 2007 @ 543650c7f54c / nucleocytoplasm.cellml

Author:
Mona Zhu <devnull@localhost>
Date:
2011-01-19 16:19:50+13:00
Desc:
Changed import locations
Permanent Source URI:
https://models.cellml.org/workspace/garmendia-torres_goldbeter_jacquet_2007/rawfile/543650c7f54cd79a7169297fe895d566193442a0/nucleocytoplasm.cellml

<?xml version="1.0"?>
<model xmlns="http://www.cellml.org/cellml/1.1#" xmlns:cmeta="http://www.cellml.org/metadata/1.1#" cmeta:id="nucleocytoplasm" name="nucleocytoplasm">
	<!-- documentation -->
	<documentation xmlns="http://cellml.org/tmp-documentation">
		<article>
			<articleinfo>
				<title>Nucleocytoplasmic oscillations of the yeast transcription factor Msn2: evidence for periodic PKA activation</title>
				<author>
					<firstname>Mona</firstname>
					<surname>Zhu</surname>
					<affiliation>
						<shortaffil>Auckland Bioengineering Institute, University of Auckland</shortaffil>
					</affiliation>
				</author>
			</articleinfo>
			<section id="sec_status">
				<title>Model Status</title>
				<para>This is an import for the model "garmendiatorres_2007_1.1model.cellml". It is used to define a reoccuring structure within the model and may be used for multiple equations in the model. This file is known to run only in OpenCell in conjunction with the base file.</para>
			</section>
		</article>
	</documentation>
	
   <!-- units -->
   <units name="minute">
      <unit multiplier="60" units="second"/>
   </units>
   <units name="per_minute">
      <unit exponent="-1" units="minute"/>
   </units>
   
   <!-- components -->
   <component name="interface">
      <variable initial_value="y_init" name="y" public_interface="out" units="dimensionless"/>
      <variable name="t" public_interface="in" units="minute"/>
      <variable name="ka" public_interface="in" units="per_minute"/>
      <variable name="kb" public_interface="in" units="per_minute"/>
      <variable name="A" public_interface="in" units="dimensionless"/>
      <variable name="Vc" public_interface="in" units="per_minute"/>
      <variable name="Vd" public_interface="in" units="per_minute"/>
      <variable name="C" public_interface="in" units="dimensionless"/>
      <variable name="D" public_interface="in" units="dimensionless"/>
      <variable name="Kc" public_interface="in" units="dimensionless"/>
      <variable name="Kd" public_interface="in" units="dimensionless"/>
      <variable name="M1" public_interface="in" units="dimensionless"/>
      <variable name="y_init" public_interface="in" units="dimensionless"/>
      <math xmlns="http://www.w3.org/1998/Math/MathML">
		<apply>
			<eq/>
			<apply>
				<diff/>
				<bvar>
				<ci>t</ci>
				</bvar>
				<ci>y</ci>
			</apply>
			<apply>
				<minus/>
				<apply>
					<plus/>
					<apply>
						<minus/>
						<apply>
							<times/>
							<ci>ka</ci>
							<ci>A</ci>
						</apply>
						<apply>
							<times/>
							<ci>kb</ci>
							<ci>y</ci>
						</apply>
					</apply>
					<apply>
						<divide/>
						<apply>
							<times/>
							<ci>Vc</ci>
							<ci>C</ci>
							<ci>M1</ci>
						</apply>
						<apply>
							<plus/>
							<ci>Kc</ci>
							<ci>M1</ci>
						</apply>
					</apply>
				</apply>
				<apply>
					<divide/>
					<apply>
						<times/>
						<ci>Vd</ci>
						<ci>D</ci>
						<ci>y</ci>
					</apply>
					<apply>
						<plus/>
						<ci>Kd</ci>
						<ci>y</ci>
					</apply>
				</apply>
			</apply>
		</apply>
	  </math>
	</component>
	
	<!-- metadata -->
	<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqs="http://www.cellml.org/bqs/1.0#" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#">
		<rdf:Description rdf:about="nucleocytoplasm">
			<dc:creator rdf:parseType="Resource">
				<vCard:N rdf:parseType="Resource">
					<vCard:Family>Zhu</vCard:Family>
					<vCard:Given>Xin Yue</vCard:Given>
					<vCard:Other>Mona</vCard:Other>
				</vCard:N>
				<vCard:EMAIL rdf:parseType="Resource">
					<rdf:value>xzhu055@aucklanduni.ac.nz</rdf:value>
					<rdf:type rdf:resource="http://imc.org/vCard/3.0#internet"/>
				</vCard:EMAIL>
				<vCard:ORG rdf:parseType="Resource">
					<vCard:Orgname>The University of Auckland</vCard:Orgname>
					<vCard:Orgunit>Auckland Bioengineering Institute</vCard:Orgunit>
				</vCard:ORG>
			</dc:creator>
			<dcterms:created rdf:parseType="Resource">
				<dcterms:W3CDTF>21-12-2010</dcterms:W3CDTF>
			</dcterms:created>
		</rdf:Description>
	</rdf:RDF>
</model>