- Author:
- Catherine Lloyd <c.lloyd@auckland.ac.nz>
- Date:
- 2010-04-16 13:03:22+12:00
- Desc:
- Fixed broken RDF. Added initial conditions to the varibales calculated from ODEs (by reading off the values from figure 2). Re-tested the model in OpenCell and COR and updated the model curation status - the CellML model does replicate figure 2 completely. The previous curation statement was incorrect as the curator hadn't noticed there were two different scales on the y axis in figure 2.
- Permanent Source URI:
- https://models.cellml.org/workspace/goldbeter_1995/rawfile/d5d9f34afb60dbb0dd219b6bd4d502d4a25fef02/goldbeter_1995.session.xml
<?xml version='1.0' encoding='utf-8'?>
<RDF:RDF xmlns:NS2="http://www.cellml.org/tools/pcenv/" xmlns:NS1="http://www.cellml.org/metadata/graphs/1.0#" xmlns:NC="http://home.netscape.com/NC-rdf#" xmlns:RDF="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<RDF:Description RDF:about="rdf:#$7yh1s1">
<NS1:variable RDF:resource="goldbeter_1995.cellml#environment_time"/>
</RDF:Description>
<RDF:Description RDF:about="http://www.cellml.org/tools/pcenv/splitter/intergraph2" NS2:splitterState_collapsedAfter="true" NS2:splitterState_prevHeight="349" NS2:splitterState_nextHeight="0"/>
<RDF:Description RDF:about="rdf:#$fyh1s1">
<NS1:variable RDF:resource="goldbeter_1995.cellml#environment_time"/>
</RDF:Description>
<RDF:Description RDF:about="http://www.cellml.org/tools/pcenv/modlayoutsplit" NS2:splitterState_collapsedBefore="true" NS2:splitterState_prevWidth="196" NS2:splitterState_nextWidth="452"/>
<RDF:Description RDF:about="rdf:#$4yh1s1">
<NS1:variable RDF:resource="goldbeter_1995.cellml#M_M"/>
</RDF:Description>
<RDF:Description RDF:about="rdf:#$0yh1s1">
<RDF:first RDF:resource="rdf:#$1yh1s1"/>
</RDF:Description>
<RDF:Description RDF:about="rdf:#$myh1s1" NS1:colour="#99ffff">
<NS1:type RDF:resource="http://www.cellml.org/metadata/graphs/1.0#line"/>
<NS1:x-variable RDF:resource="rdf:#$nyh1s1"/>
<NS1:y-variable RDF:resource="rdf:#$oyh1s1"/>
</RDF:Description>
<RDF:Description RDF:about="rdf:#$+xh1s1">
<RDF:first RDF:resource="rdf:#$i+HIS2"/>
<RDF:rest RDF:resource="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/>
</RDF:Description>
<RDF:Description RDF:about="rdf:#$8yh1s1">
<NS1:variable RDF:resource="goldbeter_1995.cellml#P0_P0"/>
</RDF:Description>
<RDF:Description RDF:about="rdf:#$nyh1s1">
<NS1:variable RDF:resource="goldbeter_1995.cellml#environment_time"/>
</RDF:Description>
<RDF:Description RDF:about="http://www.cellml.org/tools/pcenv/splitter/graph_key_graph1" NS2:splitterState_prevHeight="278" NS2:splitterState_nextHeight="189"/>
<RDF:Description RDF:about="rdf:#$dyh1s1">
<RDF:first RDF:resource="rdf:#$eyh1s1"/>
<RDF:rest RDF:resource="rdf:#$hyh1s1"/>
</RDF:Description>
<RDF:Description RDF:about="rdf:#$kyh1s1">
<NS1:variable RDF:resource="goldbeter_1995.cellml#PN_PN"/>
</RDF:Description>
<RDF:Description RDF:about="rdf:#$Yxh1s1">
<RDF:first RDF:resource="rdf:#$g+HIS2"/>
<RDF:rest RDF:resource="rdf:#$.xh1s1"/>
</RDF:Description>
<RDF:Description RDF:about="rdf:#$2yh1s1" NS1:colour="#ff0000">
<NS1:type RDF:resource="http://www.cellml.org/metadata/graphs/1.0#line"/>
<NS1:x-variable RDF:resource="rdf:#$3yh1s1"/>
<NS1:y-variable RDF:resource="rdf:#$4yh1s1"/>
</RDF:Description>
<RDF:Description RDF:about="http://www.cellml.org/tools/pcenv/splitter/graph_sel_graph1">
<NS2:activegraph RDF:resource="rdf:#$i+HIS2"/>
</RDF:Description>
<RDF:Description RDF:about="rdf:#$.xh1s1">
<RDF:first RDF:resource="rdf:#$h+HIS2"/>
<RDF:rest RDF:resource="rdf:#$+xh1s1"/>
</RDF:Description>
<RDF:Description RDF:about="http://www.cellml.org/tools/pcenv/splitter/graph_key_graph3" NS2:splitterState_collapsedAfter="true" NS2:splitterState_nextHeight="0"/>
<RDF:Description RDF:about="http://www.cellml.org/tools/pcenv/splitter/graph_sel_graph3">
<NS2:activegraph RDF:resource="rdf:#$g+HIS2"/>
</RDF:Description>
<RDF:Description RDF:about="http://www.cellml.org/tools/pcenv/displayGraphs">
<RDF:first RDF:resource="rdf:#$Yxh1s1"/>
</RDF:Description>
<RDF:Seq RDF:about="rdf:#$Xxh1s1">
</RDF:Seq>
<RDF:Description RDF:about="rdf:#$g+HIS2" NS2:graphname="Untitled">
<NS1:x-scaling RDF:resource="http://www.cellml.org/metadata/graphs/1.0#identity"/>
<NS1:y-scaling RDF:resource="http://www.cellml.org/metadata/graphs/1.0#identity"/>
<NS1:decoration RDF:resource="http://www.cellml.org/metadata/graphs/1.0#none"/>
<NS1:traces RDF:resource="rdf:#$Zxh1s1"/>
</RDF:Description>
<RDF:Description RDF:about="rdf:#$hyh1s1">
<RDF:first RDF:resource="rdf:#$iyh1s1"/>
<RDF:rest RDF:resource="rdf:#$lyh1s1"/>
</RDF:Description>
<RDF:Description RDF:about="http://www.cellml.org/tools/pcenv/splitter/graph_key_graph2" NS2:splitterState_collapsedAfter="true" NS2:splitterState_nextHeight="0"/>
<RDF:Description RDF:about="rdf:#$oyh1s1">
<NS1:variable RDF:resource="goldbeter_1995.cellml#Pt_Pt"/>
</RDF:Description>
<RDF:Description RDF:about="rdf:#$h+HIS2" NS2:graphname="Diagram of Goldbeter '95 model for circadian oscillations in PER protein and per mRNA" NS2:externalurl="goldbeter_1995.xul"/>
<RDF:Seq RDF:about="http://www.cellml.org/tools/pcenv/loadedModels">
<RDF:li RDF:resource="goldbeter_1995.cellml"/>
</RDF:Seq>
<RDF:Description RDF:about="rdf:#$i+HIS2" NS2:graphname="Circadian oscillations in PER protein and per mRNA">
<NS1:x-scaling RDF:resource="http://www.cellml.org/metadata/graphs/1.0#identity"/>
<NS1:y-scaling RDF:resource="http://www.cellml.org/metadata/graphs/1.0#identity"/>
<NS1:decoration RDF:resource="http://www.cellml.org/metadata/graphs/1.0#none"/>
<NS1:traces RDF:resource="rdf:#$0yh1s1"/>
</RDF:Description>
<RDF:Description RDF:about="rdf:#$gyh1s1">
<NS1:variable RDF:resource="goldbeter_1995.cellml#P2_P2"/>
</RDF:Description>
<RDF:Description RDF:about="http://www.cellml.org/tools/pcenv/splitter/graph_sel_graph2">
<NS2:activegraph RDF:resource="rdf:#$h+HIS2"/>
</RDF:Description>
<RDF:Description RDF:about="rdf:#$iyh1s1" NS1:colour="#33ff33">
<NS1:type RDF:resource="http://www.cellml.org/metadata/graphs/1.0#line"/>
<NS1:x-variable RDF:resource="rdf:#$jyh1s1"/>
<NS1:y-variable RDF:resource="rdf:#$kyh1s1"/>
</RDF:Description>
<RDF:Description RDF:about="rdf:#$eyh1s1" NS1:colour="#cc33cc">
<NS1:type RDF:resource="http://www.cellml.org/metadata/graphs/1.0#line"/>
<NS1:x-variable RDF:resource="rdf:#$fyh1s1"/>
<NS1:y-variable RDF:resource="rdf:#$gyh1s1"/>
</RDF:Description>
<RDF:Description RDF:about="rdf:#$byh1s1">
<NS1:variable RDF:resource="goldbeter_1995.cellml#environment_time"/>
</RDF:Description>
<RDF:Description RDF:about="rdf:#$Zxh1s1">
<RDF:first RDF:resource="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/>
</RDF:Description>
<RDF:Description RDF:about="rdf:#$6yh1s1" NS1:colour="#ffff33">
<NS1:type RDF:resource="http://www.cellml.org/metadata/graphs/1.0#line"/>
<NS1:x-variable RDF:resource="rdf:#$7yh1s1"/>
<NS1:y-variable RDF:resource="rdf:#$8yh1s1"/>
</RDF:Description>
<RDF:Description RDF:about="http://www.cellml.org/tools/pcenv/splitter/graphedit" NS2:splitterState_prevWidth="450" NS2:splitterState_nextWidth="817"/>
<RDF:Description RDF:about="rdf:#$3yh1s1">
<NS1:variable RDF:resource="goldbeter_1995.cellml#environment_time"/>
</RDF:Description>
<RDF:Description RDF:about="rdf:#$9yh1s1">
<RDF:first RDF:resource="rdf:#$ayh1s1"/>
<RDF:rest RDF:resource="rdf:#$dyh1s1"/>
</RDF:Description>
<RDF:Description RDF:about="rdf:#$ayh1s1" NS1:colour="#3366ff">
<NS1:type RDF:resource="http://www.cellml.org/metadata/graphs/1.0#line"/>
<NS1:x-variable RDF:resource="rdf:#$byh1s1"/>
<NS1:y-variable RDF:resource="rdf:#$cyh1s1"/>
</RDF:Description>
<RDF:Description RDF:about="rdf:#$jyh1s1">
<NS1:variable RDF:resource="goldbeter_1995.cellml#environment_time"/>
</RDF:Description>
<RDF:Description RDF:about="http://www.cellml.org/tools/pcenv/splitter/intergraph1" NS2:splitterState_prevHeight="506" NS2:splitterState_nextHeight="349"/>
<RDF:Description RDF:about="goldbeter_1995.cellml" NS2:modelname="goldbeter_1995_version01" NS2:modelfrozen="true">
<NS2:derivedmodels RDF:resource="rdf:#$Xxh1s1"/>
</RDF:Description>
<RDF:Description RDF:about="rdf:#$1yh1s1">
<RDF:first RDF:resource="rdf:#$2yh1s1"/>
<RDF:rest RDF:resource="rdf:#$5yh1s1"/>
</RDF:Description>
<RDF:Description RDF:about="rdf:#$5yh1s1">
<RDF:first RDF:resource="rdf:#$6yh1s1"/>
<RDF:rest RDF:resource="rdf:#$9yh1s1"/>
</RDF:Description>
<RDF:Description RDF:about="rdf:#$cyh1s1">
<NS1:variable RDF:resource="goldbeter_1995.cellml#P1_P1"/>
</RDF:Description>
<RDF:Description RDF:about="rdf:#$lyh1s1">
<RDF:first RDF:resource="rdf:#$myh1s1"/>
<RDF:rest RDF:resource="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/>
</RDF:Description>
</RDF:RDF>
