Model Mathematics

Component: environment

Component: ATbl

ddtime ATbl = Qb CTbf - CTblf + Qp CTpf - CTbl + Ql CTlf - CTbl + Qt 1.0 - ts CTtv - CTblf + k2T

Component: ADbl

ddtime ADbl = Qbt CDbf - CDblf + Qp CDpf - CDblf + Ql CDlf - CDbl

Component: CT_A

ddtime CT_A = kTA_on CTblf CAf - kTA_off CT_A

Component: CD_A

ddtime CD_A = kDA_on CDblf CAf - kDA_off CD_A

Component: CTblf

CTblf = CTbl - CT_A

Component: CDblf

CDblf = CDbl - CD_A

Component: CAf

CAf = CA - CT_A + CD_A

Component: ATl

ddtime ATl = Ql CTbl - CTlf - Vmax1 CTlf km5alpha + CTlf + k1T ATl PTl

Component: ADl

ddtime ADl = Ql CDbl - CDlf - Vmax1 CTlf km5alpha + CTlf + k1D ADl PDl

Component: CTlf

CTlf = CTl PTl

Component: CDlf

CDlf = CDl PDl

Component: ATif

ddtime ATif = Qt 1.0 - ts CTblf - CTif PTif + mu CTst PTst - CTif + k1T CLH

Component: ATst

ddtime ATst = mu CTif - CTst PTst

Component: CTtv

CTtv = CTif PTif

Component: ATp

ddtime ATp = Qp CTbl - CTpf - Vmax0 CTpf km5alpha + CTpf

Component: ADp

ddtime ADp = Qp CDbl - CDpf - Vmax0 CTpf km5alpha + CTpf

Component: CT_R

ddtime CT_R = kTR_on CTpf CRf - kTR_off CT_R

Component: CD_R

ddtime CD_R = kDR_on CDpf CRf - kDR_off CD_R

Component: CDT

ddtime CDT = kDT_on CD_R CT_R - kDT_off CDT

Component: CDD

ddtime CDD = kDD_on CD_R 2.0 - kDD_off CDD

Component: CTT

ddtime CTT = kTT_on CT_R 2.0 - kTT_off CTT

Component: CDD5a

ddtime CDD5a = kDNA_onDD5a CDD CDNA5af - kDNA_offDD5a CDD5a

Component: CDDcd

ddtime CDDcd = kDNA_onDDcd CDD CDNAcdf - kDNA_offDDcd CDDcd

Component: CDDsec

ddtime CDDsec = kDNA_onDDsec CDD CDNAsecf - kDNA_offDDsec CDDsec

Component: CDDcp

ddtime CDDcp = kDNA_onDDcp CDD CDNAcpf - kDNA_offDDcp CDDcp

Component: CDT5a

ddtime CDT5a = kDNA_onDT5a CDT CDNA5af - kDNA_offDT5a CDT5a

Component: CDTcd

ddtime CDTcd = kDNA_onDTcd CDT CDNAcdf - kDNA_offDTcd CDTcd

Component: CDTsec

ddtime CDTsec = kDNA_onDTsec CDT CDNAsecf - kDNA_offDTsec CDTsec

Component: CDTcp

ddtime CDTcp = kDNA_onDTcp CDT CDNAcpf - kDNA_offDTcp CDTcp

Component: CTT5a

ddtime CTT5a = kDNA_onTT5a CTT CDNA5af - kDNA_offTT5a CTT5a

Component: CTTcd

ddtime CTTcd = kDNA_onTTcd CTT CDNAcdf - kDNA_offTTcd CTTcd

Component: CTTsec

ddtime CTTsec = kDNA_onTTsec CTT CDNAsecf - kDNA_offTTsec CTTsec

Component: CTTcp

ddtime CTTcp = kDNA_onTTcp CTT CDNAcpf - kDNA_offTTcp CTTcp

Component: CTpf

CTpf = CTp - CT_R + 2.0 CTT + CDT + T 1.0 + NTp T = CTTsec + CDTsec + CTT5a + CDT5a + CTTcd + CDTcd + CTTcp + CDTcp

Component: CDpf

CDpf = CDp - CD_R + 2.0 CDD + CDT + D 1.0 + NDp D = CDDsec + CDTsec + CDD5a + CDT5a + CDDcd + CDTcd + CDDcp + CDTcp

Component: CRf

CRf = CR - CT_R + CD_R + 2.0 CTT + CDD + CDT + 2.0 CDNAcdf + CDNAsecf + CDNAcpf + CDNA5af

Component: CDNAcdf

CDNAcdf = CDNAcd - CTTcd + CDDcd + CDTcd

Component: CDNAsecf

CDNAsecf = CDNAsec - CTTsec + CDDsec + CDTsec

Component: CDNA5af

CDNA5af = CDNA5a - CTT5a + CDD5a + CDT5a

Component: CDNAcpf

CDNAcpf = CDNAcp - CTTcp + CDDcp + CDTcp

Component: DNAocp

DNAocp = CTTcp + CDDcp + CDTcp CDNAcp

Component: DNAosec

DNAosec = CTTsec + CDDsec + CDTsec CDNAsec

Component: DNAocd

DNAocd = CTTcd + CDDcd + CDTcd CDNAcd

Component: DNAo5a

DNAo5a = CTT5a + CDD5a + CDT5a CDNA5a

Component: ATb

ddtime ATb = Qb CTblf - CTb PTb

Component: ADb

ddtime ADb = Qbt CDblf - CDb PDb

Component: ALH

A =- kLH1 alpha_T CTblf + alpha_D CDblf + kLH2 B = kLH3 ddtime ALH = A - kLH4 ALH if A > B B - kLH4 ALH otherwise

Component: AR

ddtime AR = k1R - keR CRf

Component: CR

CR = AR Vp

Component: Qp

Qp = kQp Vpc Vpc = VPC1 + VPC2

Component: Vmax

Vmax = k5a DNAo5a

Component: VPC1

ddtime VPC1 = VPC1 VPC1b kcpl DNAocp - kcd1 1.0 - DNAocd VPC1

Component: VPL1

ddtime VPL1 = VPC1 VPC1b ksec DNAosec - kflo VPL1

Component: Vp

Vp = VPC1 + VPC2 + VPL1 + VPL2

Component: model_parameters

Qb = Qc - Qp + Qt + Ql Qbt = Qc - Qp + Ql CTbf = CTb PTb CDbf = CDb PDb