Model Mathematics

Component: environment

Component: membrane

dd time V =- i_sp + i_Na + i_K + i_l + i_Ca + i_SK + i_ex Cm

Component: excitatory_synapse

i_sp = G V - E_rev G = L tau1 - D tau2

Component: sodium_channel

i_Na = g_Na m 3.0 h V - E_Na

Component: sodium_channel_m_gate

alpha_m = 0.109 V + 38.0 1.0 -- V + 38.0 5.0 beta_m = 0.0744 V + 38.0 V + 38.0 5.0 - 1.0 dd time m = alpha_m 1.0 - m - beta_m m

Component: sodium_channel_h_gate

alpha_h = 0.0192 - 55.0 + V 15.0 beta_h = 2.48 1.0 + 17.0 - V 21.0 dd time h = alpha_h 1.0 - h - beta_h h

Component: potassium_channel

i_K = g_K n 4.0 V - E_K

Component: potassium_channel_n_gate

alpha_n = 0.012 V + 45.0 1.0 -- 45.0 + V 5.0 beta_n = 0.204 - V + 50.0 40.0 dd time n = alpha_n 1.0 - n - beta_n n

Component: leak_channel

i_l = g_l V - E_l

Component: calcium_channel

i_Ca = PCa m 2.0 h ghk ghk = V 2.0 F 2.0 R T Cao - Ca0 2.0 V F R T 1.0 - 2.0 V F R T

Component: calcium_channel_m_gate

alpha_m = 5.0 1.0 + -0.075 V - 5.0 beta_m = 0.05 V - 2.0 1.0 - V - 2.0 8.0 dd time m = alpha_m 1.0 - m - beta_m m

Component: calcium_channel_h_gate

h = Ff - time tau_f + Fm - time tau_m + Fs - time tau_s + Fr

Component: calcium_dependent_potassium_channel

i_SK = g_SK m 2.0 V - E_K

Component: calcium_dependent_potassium_channel_m_gate

m_infinity = Car 1.0 + Car tau_m = 1.0 beta_k 1.0 + Car Car = Ca0 Cac n_SK dd time m =- m - m_infinity tau_m

Component: buffered_calcium_diffusion

Cai = CaBu k2b - Cai Bu k1b Bu = CaBu k2b - Cai Bu k1b CaBu = Cai Bu k1b - CaBu k2b FCai = Cai2 - Cai DCa Ai2 delta_r kfc = DCa Ai2 delta_r vol_i kbc = DCa Ai2 delta_r vol_i

Component: calcium_extrusion

i_ex = Vmax Ca0 Kex + Ca0 - Vmax Ca_rest Kex + Ca_rest

Component: calcium_triggered_exocytosis

k1f = a1 Ca0 b1 + Ca0 k1b = a2 k2 = a3 Ca0 3.0 B = A k1f - B k1b + B k2 C = B k2 SR = k2 B

Component: calcium_indicator

Dy = Dyi2 kbd - Dy kfd kfd = Ddy Ai2 delta_r vol_i kbd = Ddy Ai2 delta_r vol_i CaDy = Dy Cai k1d - CaDy k2d FDy = 1.0 - F0 FCaDy + F0

Component: calcium_concentration

dd time Ca0 = kbc Ca1 + k2b CaBu + k2d CaDy - i_Ca + i_ex A0 2.0 F vol0 + kfc Ca0 + k1b Bu Ca0 + k1d Dy Ca0

Component: model_parameters

delta_r = diameter 2.0 Nc - 1.0