Location: Andre's Hodgkin Huxley model @ 930166f28bc3 / experiments / voltage-clamp.xml

Author:

David Nickerson <nickerso@users.sourceforge.net>

Date:

2012-09-26 16:19:50+12:00

Desc:

fixing up references to the tutorial to match what the exposure on the live site wants to used.

Permanent Source URI:

https://models.cellml.org/w/andre/HH/rawfile/930166f28bc386e6ad7611a3a8ee5ffd5a3490df/experiments/voltage-clamp.xml

<?xml version="1.0" encoding="iso-8859-1"?>
<model xmlns="http://www.cellml.org/cellml/1.1#" xmlns:cellml="http://www.cellml.org/cellml/1.1#" xmlns:cmeta="http://www.cellml.org/metadata/1.0#" xmlns:xlink="http://www.w3.org/1999/xlink" name="voltage_clamp" cmeta:id="voltage_clamp">
  

  <import xlink:href="../components/units.xml">
    <units name="ms" units_ref="ms"/>
    <units name="mV" units_ref="mV"/>
    <units name="K" units_ref="K"/>
  </import>
  <import xlink:href="../components/voltage-clamp.xml">
    <component name="model" component_ref="voltage_clamp"/>
  </import>
  <import xlink:href="../components/default-variable-values.xml">
    <component name="default_parameters" component_ref="parameters"/>
    <component name="default_initial_conditions" component_ref="initial_conditions"/>
  </import>
  
  <component cmeta:id="interface" name="interface">
    
    <variable name="Vnew" public_interface="in" private_interface="out" units="mV"/>
  </component>
  <connection>
    <map_components component_1="interface" component_2="model"/>
    <map_variables variable_1="Vnew" variable_2="Vnew"/>
  </connection>
  
  <component name="time" cmeta:id="time_component">
    
    <variable cmeta:id="time" name="time" initial_value="-10.0" public_interface="out" units="ms"/>
  </component>
  <connection>
    <map_components component_1="model" component_2="time"/>
    <map_variables variable_1="time" variable_2="time"/>
  </connection>

  <component name="parameters" cmeta:id="parameters">
    
    <variable cmeta:id="T" name="T" initial_value="277.15" public_interface="out" units="K"/>
  </component>
  <connection>
    <map_components component_1="model" component_2="parameters"/>
    <map_variables variable_1="T" variable_2="T"/>
  </connection>
  <connection>
    <map_components component_1="model" component_2="default_parameters"/>
    <map_variables variable_1="VNa" variable_2="VNa"/>
    <map_variables variable_1="VK" variable_2="VK"/>
    <map_variables variable_1="Vleak" variable_2="Vleak"/>
    <map_variables variable_1="gNa_max" variable_2="gNa_max"/>
    <map_variables variable_1="gK_max" variable_2="gK_max"/>
    <map_variables variable_1="gleak_max" variable_2="gleak_max"/>
    <map_variables variable_1="Tref_rates" variable_2="Tref_rates"/>
    <map_variables variable_1="Q10_rates" variable_2="Q10_rates"/>
  </connection>
  
  <component name="initial_conditions" cmeta:id="initial_conditions">
    
  </component>
  <connection>
    <map_components component_1="model" component_2="default_initial_conditions"/>
    <map_variables variable_1="V_initial" variable_2="V_initial"/>
    <map_variables variable_1="m_initial" variable_2="m_initial"/>
    <map_variables variable_1="h_initial" variable_2="h_initial"/>
    <map_variables variable_1="n_initial" variable_2="n_initial"/>
  </connection>

  <group>
    <relationship_ref relationship="encapsulation"/>
    <component_ref component="interface">
      <component_ref component="model"/>
      <component_ref component="time"/>
      <component_ref component="parameters"/>
      <component_ref component="initial_conditions"/>
      <component_ref component="default_parameters"/>
      <component_ref component="default_initial_conditions"/>
    </component_ref>
  </group>
</model>