- Author:
- David Nickerson <nickerso@users.sourceforge.net>
- Date:
- 2015-05-25 08:31:46+12:00
- Desc:
- adding a SED-ML document which does nested repeated tasks to iterate over clamp potential and temperature; doesn't work with get-sed-ml-client
- Permanent Source URI:
- https://models.cellml.org/w/andre/HH/rawfile/957c2190e1eed47d7634613250bc274dc836b826/sed-ml/voltage-clamp-temperature.xml
<?xml version="1.0" encoding="utf-8"?>
<sedML xmlns="http://sed-ml.org/" xmlns:math="http://www.w3.org/1998/Math/MathML"
level="1" version="1"
xmlns:cellml="http://www.cellml.org/cellml/1.1#">
<listOfSimulations>
<uniformTimeCourse id="simulation1" initialTime="0"
outputStartTime="0" outputEndTime="50"
numberOfPoints="500">
<algorithm kisaoID="KISAO:0000019" />
</uniformTimeCourse>
</listOfSimulations>
<listOfModels>
<model id="model1" name="voltage_clamp" language="urn:sedml:language:cellml"
source="../experiments/voltage-clamp-005.xml" />
</listOfModels>
<listOfTasks>
<task id="task0" name="VoltageClamp" modelReference="model1"
simulationReference="simulation1" />
<repeatedTask id="task1" resetModel="false" range="currentPotential">
<listOfRanges>
<uniformRange id="currentPotential" start="0.0" end="-130" numberOfPoints="2" type="linear" />
</listOfRanges>
<listOfChanges>
<setValue
target="/cellml:model/cellml:component[@name='parameters']/cellml:variable[@name='clamp_potential']"
range="currentPotential" modelReference="model1">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci>currentPotential</ci>
</math>
</setValue>
</listOfChanges>
<listOfSubTasks>
<subTask order="1" task="task0" />
</listOfSubTasks>
</repeatedTask>
<repeatedTask id="task2" resetModel="true" range="currentTemperature">
<listOfRanges>
<uniformRange id="currentTemperature" start="270" end="310" numberOfPoints="2" type="linear" />
</listOfRanges>
<listOfChanges>
<setValue
target="/cellml:model/cellml:component[@name='parameters']/cellml:variable[@name='T']"
range="currentTemperature" modelReference="model1">
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci>currentTemperature</ci>
</math>
</setValue>
</listOfChanges>
<listOfSubTasks>
<subTask order="1" task="task1" />
</listOfSubTasks>
</repeatedTask>
</listOfTasks>
<listOfDataGenerators>
<dataGenerator id="dgTime" name="Time">
<listOfVariables>
<variable id="t" taskReference="task2"
target="/cellml:model/cellml:component[@name='outputs']/cellml:variable[@name='time']" />
</listOfVariables>
<math:math>
<math:ci>t</math:ci>
</math:math>
</dataGenerator>
<dataGenerator id="dgV" name="Membrane Potential">
<listOfVariables>
<variable id="V" taskReference="task2"
target="/cellml:model/cellml:component[@name='outputs']/cellml:variable[@name='V']" />
</listOfVariables>
<math:math>
<math:ci>V</math:ci>
</math:math>
</dataGenerator>
<dataGenerator id="dgINa" name="INa">
<listOfVariables>
<variable id="INa" taskReference="task2"
target="/cellml:model/cellml:component[@name='outputs']/cellml:variable[@name='INa']" />
</listOfVariables>
<math:math>
<math:ci>INa</math:ci>
</math:math>
</dataGenerator>
<dataGenerator id="dgIK" name="IK">
<listOfVariables>
<variable id="IK" taskReference="task2"
target="/cellml:model/cellml:component[@name='outputs']/cellml:variable[@name='IK']" />
</listOfVariables>
<math:math>
<math:ci>IK</math:ci>
</math:math>
</dataGenerator>
<dataGenerator id="dgIleak" name="Ileak">
<listOfVariables>
<variable id="Ileak" taskReference="task2"
target="/cellml:model/cellml:component[@name='outputs']/cellml:variable[@name='Ileak']" />
</listOfVariables>
<math:math>
<math:ci>Ileak</math:ci>
</math:math>
</dataGenerator>
</listOfDataGenerators>
<listOfOutputs>
<report id="report" name="timecourse data">
<listOfDataSets>
<dataSet id="col_1" dataReference="dgTime" label="t" />
<dataSet id="col_2" dataReference="dgV" label="V" />
<dataSet id="col_3" dataReference="dgINa" label="INa" />
<dataSet id="col_4" dataReference="dgIK" label="IK" />
<dataSet id="col_5" dataReference="dgIleak" label="Ileak" />
</listOfDataSets>
</report>
</listOfOutputs>
</sedML>
