- Author:
- Matthias K?nig <matthias.koenig@charite.de>
- Date:
- 2013-03-25 12:33:06+01:00
- Desc:
- Initial commit.
COPASI 4.8 (Build 35) kinetic equations with test cases implemented.
- Permanent Source URI:
- https://models.cellml.org/w/matthiaskoenig/MetabolicComponentLibrary/rawfile/1099d7f4749a60d2aceccc2e0d98ed28086fbe2a/SpecificActivationRev.cellml
<?xml version="1.0" encoding="utf-8"?>
<!--
This CellML file was generated on 3/21/2013 at 8:59:27 at AM using:
COR (0.9.31.1409)
Copyright 2002-2013 Dr Alan Garny
http://cor.physiol.ox.ac.uk/ - cor@physiol.ox.ac.uk
CellML 1.0 was used to generate this model
http://www.cellml.org/
-->
<model name="SpecificActivationRev" cmeta:id="SpecificActivationRev" xmlns="http://www.cellml.org/cellml/1.0#" xmlns:cellml="http://www.cellml.org/cellml/1.0#" xmlns:cmeta="http://www.cellml.org/metadata/1.0#">
<units name="mM">
<unit units="mole" prefix="milli"/>
<unit units="liter" exponent="-1"/>
</units>
<units name="per_second">
<unit units="second" exponent="-1"/>
</units>
<units name="mM_per_second">
<unit units="mM"/>
<unit units="second" exponent="-1"/>
</units>
<component name="Test">
<variable name="t" units="second"/>
<variable name="J" units="mM_per_second" public_interface="in"/>
<variable name="S" units="mM" initial_value="1" public_interface="out"/>
<variable name="P" units="mM" initial_value="0" public_interface="out"/>
<variable name="A" units="mM" public_interface="out"/>
<variable name="V_f" units="mM_per_second" public_interface="out"/>
<variable name="V_b" units="mM_per_second" public_interface="out"/>
<variable name="Km_S" units="mM" public_interface="out"/>
<variable name="Km_P" units="mM" public_interface="out"/>
<variable name="Km_A" units="mM" public_interface="out"/>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<eq/>
<ci>V_f</ci>
<cn cellml:units="mM_per_second">10</cn>
</apply>
<apply>
<eq/>
<ci>V_b</ci>
<cn cellml:units="mM_per_second">3</cn>
</apply>
<apply>
<eq/>
<ci>A</ci>
<cn cellml:units="mM">0.3</cn>
</apply>
<apply>
<eq/>
<ci>Km_S</ci>
<cn cellml:units="mM">0.5</cn>
</apply>
<apply>
<eq/>
<ci>Km_P</ci>
<cn cellml:units="mM">0.5</cn>
</apply>
<apply>
<eq/>
<ci>Km_A</ci>
<cn cellml:units="mM">0.1</cn>
</apply>
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>t</ci>
</bvar>
<ci>S</ci>
</apply>
<apply>
<minus/>
<ci>J</ci>
</apply>
</apply>
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>t</ci>
</bvar>
<ci>P</ci>
</apply>
<ci>J</ci>
</apply>
</math>
</component>
<component name="SpecificActivationRev">
<variable name="J" units="mM_per_second" public_interface="out"/>
<variable name="S" units="mM" public_interface="in"/>
<variable name="P" units="mM" public_interface="in"/>
<variable name="A" units="mM" public_interface="in"/>
<variable name="V_f" units="mM_per_second" public_interface="in"/>
<variable name="V_b" units="mM_per_second" public_interface="in"/>
<variable name="Km_S" units="mM" public_interface="in"/>
<variable name="Km_P" units="mM" public_interface="in"/>
<variable name="Km_A" units="mM" public_interface="in"/>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<eq/>
<ci>J</ci>
<apply>
<divide/>
<apply>
<times/>
<apply>
<minus/>
<apply>
<divide/>
<apply>
<times/>
<ci>V_f</ci>
<ci>S</ci>
</apply>
<ci>Km_S</ci>
</apply>
<apply>
<divide/>
<apply>
<times/>
<ci>V_b</ci>
<ci>P</ci>
</apply>
<ci>Km_P</ci>
</apply>
</apply>
<ci>A</ci>
</apply>
<apply>
<plus/>
<ci>Km_A</ci>
<apply>
<times/>
<apply>
<plus/>
<cn cellml:units="dimensionless">1</cn>
<apply>
<divide/>
<ci>S</ci>
<ci>Km_S</ci>
</apply>
<apply>
<divide/>
<ci>P</ci>
<ci>Km_P</ci>
</apply>
</apply>
<ci>A</ci>
</apply>
</apply>
</apply>
</apply>
</math>
</component>
<connection>
<map_components component_1="Test" component_2="SpecificActivationRev"/>
<map_variables variable_1="J" variable_2="J"/>
<map_variables variable_1="S" variable_2="S"/>
<map_variables variable_1="P" variable_2="P"/>
<map_variables variable_1="A" variable_2="A"/>
<map_variables variable_1="V_f" variable_2="V_f"/>
<map_variables variable_1="V_b" variable_2="V_b"/>
<map_variables variable_1="Km_S" variable_2="Km_S"/>
<map_variables variable_1="Km_P" variable_2="Km_P"/>
<map_variables variable_1="Km_A" variable_2="Km_A"/>
</connection>
</model>
