Location: Metabolic Component Library @ c76a06d3187d / examples / Example_MassAction_2.cellml

Author:

Matthias K?nig <matthias.koenig@charite.de>

Date:

2013-04-15 15:31:38+02:00

Desc:

Project summary updated and first manuscript draft for CellML-MCL.

Permanent Source URI:

https://models.cellml.org/w/matthiaskoenig/MetabolicComponentLibrary/rawfile/c76a06d3187d087f00e7f3a1f4cf48f5963a5282/examples/Example_MassAction_2.cellml

<?xml version="1.0"?>
<!--

--><model xmlns="http://www.cellml.org/cellml/1.1#" xmlns:cmeta="http://www.cellml.org/metadata/1.1#" cmeta:id="Example_MassAction_2" name="Example_MassAction_2">
	
	<import xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="MetabolicComponentLibrary-v0.1.cellml">
		<component component_ref="MassActionUniUniRev" name="R1_MassActionUniUniRev"/>
		<component component_ref="MassActionUniUniRev" name="R2_MassActionUniUniRev"/>
		<units name="mM" units_ref="mM"/><units name="per_second" units_ref="per_second"/>
		<units name="mM_per_second" units_ref="mM_per_second"/>
		<units name="per_mM_per_second" units_ref="per_mM_per_second"/>
		<units name="per_mM" units_ref="per_mM"/>
	</import>  
	
	<component name="Network">
      <variable name="t" units="second"/>
      <variable name="v1" public_interface="in" units="mM_per_second"/>
	  <variable name="v2" public_interface="in" units="mM_per_second"/>
      <variable initial_value="1" name="A" public_interface="out" units="mM"/>
      <variable initial_value="0" name="B" public_interface="out" units="mM"/>
      <variable initial_value="0" name="C" public_interface="out" units="mM"/>
      <math xmlns="http://www.w3.org/1998/Math/MathML">
         <apply>
            <eq/>
            <apply>
               <diff/>
               <bvar>
                  <ci>t</ci>
               </bvar>
               <ci>A</ci>
            </apply>
            <apply>
               <minus/>
               <ci>v1</ci>
            </apply>
         </apply>
         <apply>
            <eq/>
            <apply>
               <diff/>
               <bvar>
                  <ci>t</ci>
               </bvar>
               <ci>B</ci>
            </apply>
            <apply>
               <minus/>
               <ci>v1</ci>
               <ci>v2</ci>
            </apply>
         </apply>
         <apply>
            <eq/>
            <apply>
               <diff/>
               <bvar>
                  <ci>t</ci>
               </bvar>
               <ci>C</ci>
            </apply>
            <ci>v2</ci>
         </apply>
      </math>
   </component>
   
   <component name="Reaction_1">
      <variable name="v1" private_interface="in" public_interface="out" units="mM_per_second"/>
      <variable name="A" private_interface="out" public_interface="in" units="mM"/>
      <variable name="B" private_interface="out" public_interface="in" units="mM"/>
      <variable name="k_f" private_interface="out" units="per_second"/>
      <variable name="k_b" private_interface="out" units="per_second"/>
      <math xmlns="http://www.w3.org/1998/Math/MathML">
         <apply>
            <eq/>
            <ci>k_f</ci>
            <cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="per_second">10</cn>
         </apply>
         <apply>
            <eq/>
            <ci>k_b</ci>
            <cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="per_second">3</cn>
         </apply>
      </math>
   </component>
   
   <component name="Reaction_2">
      <variable name="v2" private_interface="in" public_interface="out" units="mM_per_second"/>
      <variable name="B" private_interface="out" public_interface="in" units="mM"/>
      <variable name="C" private_interface="out" public_interface="in" units="mM"/>
      <variable name="k_f" private_interface="out" units="per_second"/>
      <variable name="k_b" private_interface="out" units="per_second"/>
      <math xmlns="http://www.w3.org/1998/Math/MathML">
         <apply>
            <eq/>
            <ci>k_f</ci>
            <cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="per_second">8</cn>
         </apply>
         <apply>
            <eq/>
            <ci>k_b</ci>
            <cn xmlns:cellml="http://www.cellml.org/cellml/1.1#" cellml:units="per_second">6</cn>
         </apply>
      </math>
   </component>
   
   <group>
      <relationship_ref relationship="encapsulation"/>
      <component_ref component="Reaction_1">
         <component_ref component="R1_MassActionUniUniRev"/>
      </component_ref>
   </group>
   <group>
      <relationship_ref relationship="encapsulation"/>
      <component_ref component="Reaction_2">
         <component_ref component="R2_MassActionUniUniRev"/>
      </component_ref>
   </group>
   
   <connection>
      <map_components component_1="Network" component_2="Reaction_1"/>
      <map_variables variable_1="v1" variable_2="v1"/>
      <map_variables variable_1="A" variable_2="A"/>
      <map_variables variable_1="B" variable_2="B"/>
   </connection>
   <connection>
      <map_components component_1="Network" component_2="Reaction_2"/>
      <map_variables variable_1="v2" variable_2="v2"/>
      <map_variables variable_1="B" variable_2="B"/>
      <map_variables variable_1="C" variable_2="C"/>
   </connection>
   
   <connection>
      <map_components component_1="Reaction_1" component_2="R1_MassActionUniUniRev"/>
      <map_variables variable_1="v1" variable_2="J"/>
      <map_variables variable_1="A" variable_2="S"/>
      <map_variables variable_1="B" variable_2="P"/>
      <map_variables variable_1="k_f" variable_2="k_f"/>
      <map_variables variable_1="k_b" variable_2="k_b"/>
   </connection>
   <connection>
      <map_components component_1="Reaction_2" component_2="R2_MassActionUniUniRev"/>
      <map_variables variable_1="v2" variable_2="J"/>
      <map_variables variable_1="B" variable_2="S"/>
      <map_variables variable_1="C" variable_2="P"/>
      <map_variables variable_1="k_f" variable_2="k_f"/>
      <map_variables variable_1="k_b" variable_2="k_b"/>
   </connection>
</model>