Date Author Log Options Exposure
2021-11-26 Shelley Fong Updating Knames [files] [tgz] [zip]
2021-11-17 Shelley Fong Using sympy for rational nullspace [files] [tgz] [zip]
2021-11-16 Shelley Fong Finding rational nullspace [files] [tgz] [zip]
2021-11-11 Shelley Fong Adding GDP phosphorylation rxn [files] [tgz] [zip]
2021-11-02 Shelley Fong Automating more [files] [tgz] [zip]
2021-10-28 Shelley Fong Renaming [files] [tgz] [zip]
2021-10-27 Shelley Fong Renaming rxnID [files] [tgz] [zip]
2021-10-27 Shelley Fong Removing legacy excel file [files] [tgz] [zip]
2021-10-26 Shelley Fong Adding intermediate compound in GEF reaction scheme [files] [tgz] [zip]
2021-10-22 Shelley Fong Updating equations to reflect GEF action and remove wrong phosphate bindings [files] [tgz] [zip]
2021-10-20 Shelley Fong Removing MATLAB files [files] [tgz] [zip]
2021-10-20 Shelley Fong Adding remaining python files or modifications [files] [tgz] [zip]
2021-10-20 Shelley Fong Rename folder and add new py solver file [files] [tgz] [zip]
2021-10-15 Shelley Fong Adding ODEs for RGP and LRGP [files] [tgz] [zip]
2021-10-14 Shelley Fong Updating contraints [files] [tgz] [zip]
2021-10-14 Shelley Fong Including phosphate binding RG and LRG as a separate reaction. Updating stoichiometry and including 2 new reactions and 2 new chemical species as a result [files] [tgz] [zip]
2021-10-13 Shelley Fong wapping G for RG and LRG as substrates for act1 and act2 reactions [files] [tgz] [zip]
2021-10-12 Shelley Fong Adding ODE for Pi [files] [tgz] [zip]
2021-10-12 Shelley Fong Undoing previous change [files] [tgz] [zip]
2021-10-12 Shelley Fong Remove R and LR terms from mu affinities for v_act1/2 [files] [tgz] [zip]
2021-10-11 Shelley Fong Adding conservation of chemostat mass check in environment. Fixing ICs to have negligible enzyme complexes [files] [tgz] [zip]
2021-10-04 Shelley Fong adding mu_Pi to reaction velocities [files] [tgz] [zip]
2021-10-04 Shelley Fong Adding phosphate group [files] [tgz] [zip]
2021-10-01 Shelley Fong Updating reaction equations with new stoichiometry for Act reaction [files] [tgz] [zip]
2021-10-01 Shelley Fong Separate G from R in stoichiometry [files] [tgz] [zip]
2021-09-28 Shelley Fong Updating closed loops in G protein metabolism [files] [tgz] [zip]
2021-09-17 Shelley Fong Using common PMR repo for units_and_constants [files] [tgz] [zip]
2021-09-17 Shelley Fong renaming parameters and updating matlab file [files] [tgz] [zip]
2021-09-16 Shelley Fong Changing names of parameters [files] [tgz] [zip]
2021-09-07 Shelley Fong adding Pub: out [files] [tgz] [zip]
2021-09-07 Shelley Fong Fixing pub: out [files] [tgz] [zip]
2021-09-06 Shelley Fong Fixing stoich matrix and exporting all variables form module to global environment in cellml [files] [tgz] [zip]
2021-09-06 Shelley Fong Bug fixes [files] [tgz] [zip]
2021-09-02 Shelley Fong Fixing ODEs [files] [tgz] [zip]
2021-09-02 Shelley Fong Fixing comment on units for Gs module [files] [tgz] [zip]
2021-09-02 Shelley Fong Fixing kinetic units [files] [tgz] [zip]
2021-08-31 Shelley Fong Renaming 'GPCR' to 'GsProtein' as the former name is wrong [files] [tgz] [zip]
2021-08-30 Shelley Fong Tidying up files [files] [tgz] [zip]
2021-08-25 Shelley Fong Adding volume arguments and changing dimensions of input kinetic parameters to uM (source literature) [files] [tgz] [zip]
2021-07-26 Shelley Fong Rename file; use constants_BG.cellml import [files] [tgz] [zip]
2021-07-26 Shelley Fong Consolidating imports of units and constants [files] [tgz] [zip]
2021-07-26 Shelley Fong Removing unnecessary file [files] [tgz] [zip]
2021-07-26 Shelley Fong Adding MATLAB script to call function to find kinetic parameters. One for each module. [files] [tgz] [zip]
2021-07-22 Shelley Fong Initial commit [files] [tgz] [zip]
2021-07-15 Shelley Fong Making various adjustments for thermodynamic consistency which are not part of original kinetic model [files] [tgz] [zip]
2021-07-08 Shelley Fong Adding scheme for making LRG from L,R,G [files] [tgz] [zip]
2021-07-07 Shelley Fong Comparing BG version against kinetic Saucerman03 model [files] [tgz] [zip]
2021-07-05 Shelley Fong Initial commit [files] [tgz] [zip]