Generated Code
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C
C There are a total of 9 entries in the algebraic variable array.
C There are a total of 8 entries in each of the rate and state variable arrays.
C There are a total of 20 entries in the constant variable array.
C
C
C VOI is time in component environment (day).
C CONSTS(1) is mu_T in component uninfected_CD4 (per_day).
C CONSTS(2) is r in component uninfected_CD4 (per_day).
C STATES(1) is T_1 in component latently_infected_CD4 (per_micro_L).
C CONSTS(3) is T_max in component uninfected_CD4 (per_micro_L).
C CONSTS(4) is k_1 in component HIV1 (micro_L_per_day).
C STATES(2) is V in component HIV1 (per_micro_L).
C CONSTS(5) is k_1_ in component hybrid_HIV1 (micro_L_per_day).
C STATES(3) is V_ in component hybrid_HIV1 (per_micro_L).
C CONSTS(6) is s_0 in component uninfected_CD4 (per_micro_L_day).
C CONSTS(7) is theta in component uninfected_CD4 (per_micro_L).
C ALGBRC(1) is s_V in component uninfected_CD4 (per_micro_L_day).
C STATES(4) is T in component uninfected_CD4 (per_micro_L).
C CONSTS(8) is k_2 in component latently_infected_CD4 (per_day).
C CONSTS(9) is k_1D in component actively_infected_CD4 (micro_L_per_day).
C ALGBRC(2) is D in component DIV (per_micro_L).
C CONSTS(10) is mu_b in component actively_infected_CD4 (per_day).
C STATES(5) is T_2 in component actively_infected_CD4 (per_micro_L).
C CONSTS(11) is k_s in component actively_coinfected_CD4 (per_day).
C CONSTS(12) is mu_bD in component actively_coinfected_CD4 (per_day).
C STATES(6) is T_D2 in component actively_coinfected_CD4 (per_micro_L).
C CONSTS(13) is mu_TD in component stably_coinfected_CD4 (per_day).
C STATES(7) is T_D1 in component stably_coinfected_CD4 (per_micro_L).
C ALGBRC(5) is N_D_t in component DIV (dimensionless).
C ALGBRC(8) is pi_D_t in component DIV (per_day).
C CONSTS(14) is mu_D in component DIV (per_day).
C ALGBRC(3) is N_t in component production_function (dimensionless).
C CONSTS(15) is t_DIV in component DIV (day).
C STATES(8) is D_ode in component DIV (per_micro_L).
C CONSTS(16) is D_0 in component DIV (per_micro_L).
C ALGBRC(6) is N_2_t in component HIV1 (dimensionless).
C CONSTS(17) is mu_V in component HIV1 (per_day).
C ALGBRC(7) is N_t_ in component hybrid_HIV1 (dimensionless).
C ALGBRC(9) is pi_t_ in component hybrid_HIV1 (per_day).
C CONSTS(18) is N_0 in component production_function (dimensionless).
C CONSTS(19) is gamma in component production_function (dimensionless).
C CONSTS(20) is t_c in component production_function (day).
C ALGBRC(4) is T_tot in component cell_population (per_micro_L).
C RATES(4) is d/dt T in component uninfected_CD4 (per_micro_L).
C RATES(1) is d/dt T_1 in component latently_infected_CD4 (per_micro_L).
C RATES(5) is d/dt T_2 in component actively_infected_CD4 (per_micro_L).
C RATES(6) is d/dt T_D2 in component actively_coinfected_CD4 (per_micro_L).
C RATES(7) is d/dt T_D1 in component stably_coinfected_CD4 (per_micro_L).
C RATES(8) is d/dt D_ode in component DIV (per_micro_L).
C RATES(2) is d/dt V in component HIV1 (per_micro_L).
C RATES(3) is d/dt V_ in component hybrid_HIV1 (per_micro_L).
C
SUBROUTINE initConsts(CONSTS, RATES, STATES)
REAL CONSTS(*), RATES(*), STATES(*)
CONSTS(1) = 0.02
CONSTS(2) = 0.03
STATES(1) = 0
CONSTS(3) = 1500
CONSTS(4) = 2.4E-5
STATES(2) = 1E-3
CONSTS(5) = 2.4E-7
STATES(3) = 0
CONSTS(6) = 10
CONSTS(7) = 1
STATES(4) = 1000
CONSTS(8) = 0.017
CONSTS(9) = 2.4E-5
CONSTS(10) = 0.24
STATES(5) = 0
CONSTS(11) = 0.48
CONSTS(12) = 0.12
STATES(6) = 0
CONSTS(13) = 0.02
STATES(7) = 0
CONSTS(14) = 0.76
CONSTS(15) = 2557
STATES(8) = 0
CONSTS(16) = 0.1
CONSTS(17) = 2.4
CONSTS(18) = 300
CONSTS(19) = 25
CONSTS(20) = 7305
RETURN
END
SUBROUTINE computeRates(VOI, CONSTS, RATES, STATES, ALGBRC)
REAL VOI, CONSTS(*), RATES(*), STATES(*), ALGBRC(*)
RATES(1) = (( CONSTS(4)*STATES(2)*STATES(4)+ CONSTS(5)*STATES(3)*STATES(4)) - CONSTS(1)*STATES(1)) - CONSTS(8)*STATES(1)
RATES(7) = CONSTS(11)*STATES(6) - CONSTS(13)*STATES(7)
ALGBRC(1) = ( CONSTS(6)*CONSTS(7))/(CONSTS(7)+STATES(2))
RATES(4) = (((ALGBRC(1) - CONSTS(1)*STATES(4))+ CONSTS(2)*STATES(4)*(1.00000 - (STATES(4)+STATES(1))/CONSTS(3))) - CONSTS(4)*STATES(2)*STATES(4)) - CONSTS(5)*STATES(3)*STATES(4)
ALGBRC(2) = TERNRY(VOI.LT.CONSTS(15), 0.00000, STATES(8))
RATES(5) = ( CONSTS(8)*STATES(1) - CONSTS(9)*ALGBRC(2)*STATES(5)) - CONSTS(10)*STATES(5)
RATES(6) = ( CONSTS(9)*ALGBRC(2)*STATES(5) - CONSTS(11)*STATES(6)) - CONSTS(12)*STATES(6)
ALGBRC(3) = CONSTS(18)*(1.00000+ CONSTS(19)*(VOI ** 2.00000/(VOI ** 2.00000+CONSTS(20) ** 2.00000)))
ALGBRC(6) = 0.100000*ALGBRC(3)
RATES(2) = (( ALGBRC(3)*CONSTS(10)*STATES(5)+ ALGBRC(6)*CONSTS(12)*STATES(6)) - CONSTS(4)*STATES(2)*STATES(4)) - CONSTS(17)*STATES(2)
ALGBRC(5) = 0.200000*ALGBRC(3)
ALGBRC(8) = 0.500000*CONSTS(10)*ALGBRC(3)
RATES(8) = TERNRY(VOI.LT.CONSTS(15), CONSTS(16)/CONSTS(15), ( ALGBRC(5)*CONSTS(12)*STATES(6)+ ALGBRC(8)*STATES(7)) - CONSTS(14)*STATES(8))
ALGBRC(7) = 0.100000*ALGBRC(3)
ALGBRC(9) = 0.0100000*CONSTS(10)*ALGBRC(3)
RATES(3) = (( ALGBRC(7)*CONSTS(12)*STATES(6)+ ALGBRC(9)*STATES(7)) - CONSTS(17)*STATES(3)) - CONSTS(5)*STATES(4)*STATES(3)
RETURN
END
SUBROUTINE computeVariables(VOI, CONSTS, RATES, STATES, ALGBRC)
REAL VOI, CONSTS(*), RATES(*), STATES(*), ALGBRC(*)
ALGBRC(1) = ( CONSTS(6)*CONSTS(7))/(CONSTS(7)+STATES(2))
ALGBRC(2) = TERNRY(VOI.LT.CONSTS(15), 0.00000, STATES(8))
ALGBRC(3) = CONSTS(18)*(1.00000+ CONSTS(19)*(VOI ** 2.00000/(VOI ** 2.00000+CONSTS(20) ** 2.00000)))
ALGBRC(6) = 0.100000*ALGBRC(3)
ALGBRC(5) = 0.200000*ALGBRC(3)
ALGBRC(8) = 0.500000*CONSTS(10)*ALGBRC(3)
ALGBRC(7) = 0.100000*ALGBRC(3)
ALGBRC(9) = 0.0100000*CONSTS(10)*ALGBRC(3)
ALGBRC(4) = STATES(4)+STATES(1)+STATES(5)+STATES(6)+STATES(7)
RETURN
END
REAL FUNCTION TERNRY(TEST, VALA, VALB)
LOGICAL TEST
REAL VALA, VALB
IF (TEST) THEN
TERNRY = VALA
ELSE
TERNRY = VALB
ENDIF
RETURN
END