Gerard, Goldbeter, 2010
This CellML model runs in OpenCell and COR. It was created from equations  to . The model parameters were taken from the Parameters document. The units have been checked and they are consistent. v_sw has been set to 0 in this particular model which means the model is de-coupled from the circadian clock. The CellML model runs to replicate the first part of figure 7B.
We propose an integrated computational model for the network of cyclin-dependent kinases (Cdks) that controls the dynamics of the mammalian cell cycle. The model contains four Cdk modules regulated by reversible phosphorylation, Cdk inhibitors, and protein synthesis or degradation. Growth factors (GFs) trigger the transition from a quiescent, stable steady state to self-sustained oscillations in the Cdk network. These oscillations correspond to the repetitive, transient activation of cyclin D/Cdk4-6 in G(1), cyclin E/Cdk2 at the G(1)/S transition, cyclin A/Cdk2 in S and at the S/G(2) transition, and cyclin B/Cdk1 at the G(2)/M transition. The model accounts for the following major properties of the mammalian cell cycle: (i) repetitive cell cycling in the presence of suprathreshold amounts of GF; (ii) control of cell-cycle progression by the balance between antagonistic effects of the tumor suppressor retinoblastoma protein (pRB) and the transcription factor E2F; and (iii) existence of a restriction point in G(1), beyond which completion of the cell cycle becomes independent of GF. The model also accounts for endoreplication. Incorporating the DNA replication checkpoint mediated by kinases ATR and Chk1 slows down the dynamics of the cell cycle without altering its oscillatory nature and leads to better separation of the S and M phases. The model for the mammalian cell cycle shows how the regulatory structure of the Cdk network results in its temporal self-organization, leading to the repetitive, sequential activation of the four Cdk modules that brings about the orderly progression along cell-cycle phases.
The original paper reference is cited below:
Temporal self-organization of the cyclin/Cdk network driving the mammalian cell cycle. Goldbeter A, Gerard C, 2009, Unite de Chronobiologie Theorique, 106(51), 21643-8. PubMed ID: 20007375
|GF-induced oscillations in the Cdk network. (A) Below a sharp threshold in the concentration of GF, the Cdk network evolves to a stable steady state, whereas sustained oscillations occur above the threshold that corresponds to a bifurcation beyond which the steady state becomes unstable|