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Metabolism

PMR2 Exposure File Acikgoz, 2009
acikgoz_2009a.cellml
PMR2 Exposure File Acikgoz, 2009
acikgoz_2009b.cellml
PMR2 Exposure File Acikgoz, Karim, Giri, Schmidt-Heck, Bader, 2009
Two compartment model of diazepam biotransformation in an organotypical culture of primary human hepatocytes
PMR2 Exposure File Acikgoz, Karim, Giri, Schmidt-Heck, Bader, 2009
Two compartment model of diazepam biotransformation in an organotypical culture of primary human hepatocytes
PMR2 Exposure File Aon, Cortassa, 2002
Coherent and robust modulation of a metabolic network by cytoskeletal organization and dynamics
PMR2 Exposure File Bakker, Mensonides, Teusink, van Hoek, Michels, Westerhoff, 2000
Compartmentation protects trypanosomes from the dangerous design of glycolysis
PMR2 Exposure File Bakker, Michels, Opperdoes, Westerhoff, 1997
Glycolysis in Bloodstream Form Trypanosoma brucei Can Be Understood in Terms of the Kinetics of the Glycolytic Enzymes
PMR2 Exposure File Beard, 2005
A biophysical model of the mitochondrial respiratory system and oxidative phosphorylation
PMR2 Exposure File Bertram, Pedersen, Luciani, Sherman, 2006
A simplified model for mitochondrial ATP production
PMR2 Exposure File Bertram, Satin, Pedersen, Luciani, Sherman, 2007
Intra- and inter-islet synchronization of metabolically driven insulin secretion
PMR2 Exposure File Bertram, Satin, Zhang, Smolen, Sherman, 2004
Calcium and Glycolysis Mediate Multiple Bursting Modes in Pancreatic Islets (glycolytic bursting model)
PMR2 Exposure File Bertram, Satin, Zhang, Smolen, Sherman, 2004
Calcium and Glycolysis Mediate Multiple Bursting Modes in Pancreatic Islets (compound bursting model)
PMR2 Exposure File Bertram, Smolen, Sherman, Mears, Atwater, Martin, Soria, 1995
A role for calcium release-activated current (CRAC) in cholinergic modulation of electrical activity in pancreatic beta-cells
PMR2 Exposure File Chassagnole, Rais, Quentin, Fell, Mazat, 2001
An integrated study of Threonine-pathway enzyme kinetics in Escherichia coli
PMR2 Exposure File Cloutier, Bolger, Lowry, Wellstead, 2009
An integrative dynamic model of brain energy metabolism using in vivo neurochemical measurements
PMR2 Exposure File Cloutier, Wellstead, 2009
The control systems structures of energy metabolism (Version A)
PMR2 Exposure File Cloutier, Wellstead, 2009
The control systems structures of energy metabolism (Version B)
PMR2 Exposure File Cloutier, Wellstead, 2009
The control systems structures of energy metabolism (Version C)
PMR2 Exposure File Cloutier, Wellstead, 2009
The control systems structures of energy metabolism (Version D)
PMR2 Exposure File Cloutier, Wellstead, 2009
The control systems structures of energy metabolism (Version E)
PMR2 Exposure File Cloutier, Wellstead, 2009
The control systems structures of energy metabolism (Version F)
PMR2 Exposure File Cortassa, Aon, Marban, Winslow, O'Rourke, 2003
An Integrated Model of Cardiac Mitrochondrial Energy Metabolism and Calcium Dynamics
PMR2 Exposure File Cortassa, Aon, Winslow, O'Rourke, 2004
A mitochondrial oscillator dependent on reactive oxygen species
PMR2 Exposure File Cronwright, Rohwer, Prior, 2002
Metabolic Control Analysis of Glycerol Synthesis in Saccharomyces cerevisiae
PMR2 Exposure File Curien, Ravanel, Dumas, 2003
A kinetic model of the branch-point between the methionine and threonine biosynthesis pathways in Arabidopsis thaliana
PMR2 Exposure File Dash, Bassingthwaighte, 2004
Blood HbO2 and HbCO2 dissociation curves at varied O2, CO2, pH, 2,3-DPG and temperature levels
PMR2 Exposure File Dijkstra, Neal, Beever, France, 1992
Simulation of nutrient digestion, absorption and outflow in the rumen: model description
PMR2 Exposure File Goldbeter, 2006
A model for the dynamics of human weight cycling
PMR2 Exposure File Grange, Holford, Guentert, 2001
A pharmacokinetic model to predict the PK interaction of L-dopa and benserazide in rats (L-dopa)
PMR2 Exposure File Grange, Holford, Guentert, 2001
A pharmacokinetic model to predict the PK interaction of L-dopa and benserazide in rats (L-dopa + Benserazide)
PMR2 Exposure File Gupta, Maurya, Stephens, Dennis, Subramaniam, 2009
An integrated model of eicosanoid metabolism and signaling based on lipidomics flux analysis
PMR2 Exposure File Heyd, Drew, 2003
A mathematical model for elongation of a peptide chain
PMR2 Exposure File Hoefnagel, Starrenburg, Martens, Hugenholtz, Kleerebezem, Van Swam, Bongers, Westerhoff, Snoep, 2002
Metabolic engineering of lactic acid bacteria, the combined approach: kinetic modelling, metabolic control and experimental analysis
PMR2 Exposure File Hynne, Dano, Sorensen, 2001
Full-scale model of glycolysis in Saccharomyces cerevisiae
PMR2 Exposure File Keener, 2001
Diffusion Induced Oscillatory Insulin Secretion
PMR2 Exposure File Kongas, van Beek, 2001
Creatine kinase in energy metabolic signaling in muscle
PMR2 Exposure File Korzeniewski, Zoladz, 2001
A model of oxidative phosphorylation in mammaliam skeletal muscle
PMR2 Exposure File Lambeth, Kushmerick, 2002
A computational model for glycogenolysis in skeletal muscle
PMR2 Exposure File Martinov, Vitvitsky, Mosharov, Banerjee, Ataullakhanov, 2000
A Substrate Switch: A New Mode of Regulation in the Methionine Metabolic Pathway
PMR2 Exposure File Martins, Mendes, Coreiro, Freire, 2001
In situ kinetic analysis of glyoxalase I and glyoxalase II in Saccharomyces cerevisiae
PMR2 Exposure File Michailova, McCulloch, 2001
Model study of ATP and ADP buffering, transport of Ca2+ and Mg2+, and regulation of ion pumps in ventricular myocyte
PMR2 Exposure File Michailova, Saucerman, Belik, McCulloch, 2005
Modeling regulation of cardiac KATP and L-type Ca2+ currents by ATP, ADP, and Mg2+
PMR2 Exposure File Mijailovich, Butler, Fredburg, 2000
Perturbed Equilibria of Myosin Binding in Airway Smooth Muscle: Bond-Length Distributions, Mechanics and ATP Metabolism
PMR2 Exposure File Modularmassactionprimer
A Primer on Modular Mass Action Modelling with CellML
PMR2 Exposure File Nazaret, Heiske, Thurley, Mazat, 2009
Mitochondrial energetic metabolism: a simplified model of TCA cycle with ATP production (unscaled version)
PMR2 Exposure File Nazaret, Heiske, Thurley, Mazat, 2009
Mitochondrial energetic metabolism: a simplified model of TCA cycle with ATP production (scaled version)
PMR2 Exposure File Novak, Tyson, 1993
Numerical analysis of a comprehensive model of M-phase control in Xenopus oocyte extracts and intact embryos: parameter values have been taken from the original published paper to reproduce figure 4A.
PMR2 Exposure File Novak, Tyson, 1993
Numerical analysis of a comprehensive model of M-phase control in Xenopus oocyte extracts and intact embryos: parameter values have been taken from the SBML model in the BioModels Database and the model simulates the synthesis and degradation of cyclin.
PMR2 Exposure File Olsen, Hauser, Kummer, 2003
Mechanism of protection of peroxidase activity by oscillatory dynamics
PMR2 Exposure File Overgaard, Holford, Rytved, Madsen, 2007
PKPD model of interleukin-21 effects on thermoregulation in monkeys (Baseline)
PMR2 Exposure File Overgaard, Holford, Rytved, Madsen, 2007
PKPD model of interleukin-21 effects on thermoregulation in monkeys (Pharmacodynamic)
PMR2 Exposure File Ralser, Lehrach, Krobitsch, Wamelink, Kowald, Gerisch, Heeren, Struys, Klipp, Jakobs, Breitenbach, 2007
Dynamic rerouting of the carbohydrate flux is key to counteracting oxidative stress
PMR2 Exposure File Reed, Nijhout, Sparks, Ulrich, 2004
A mathematical model of the methionine cycle
PMR2 Exposure File Salem, Saidel, Stanley, Cabrera, 2002
Mechanistic Model of Myocardial Energy Metabolism Under Normal and Ischemic Conditions
PMR2 Exposure File Saucerman, Brunton, Michailova, McCulloch, 2003
Modeling beta-adrenergic control of cardiac myocyte contractility in silico
PMR2 Exposure File Saucerman, McCulloch, 2004
Mechanistic systems models of cell signaling networks: a case study of myocyte adrenergic regulation
PMR2 Exposure File Sedaghat, Sherman, Quon, 2002
A mathematical model of metabolic insulin signaling pathways (without feedback)
PMR2 Exposure File Sedaghat, Sherman, Quon, 2002
A mathematical model of metabolic insulin signaling pathways (with feedback)
PMR2 Exposure File Surkis, Peskin, Tranchina, Leonard, 1998
Recovery of Cable Properties Through Active and Passive Modeling of Subthreshold Membrane Responses From Laterodorsal Tegmental Neurons
PMR2 Exposure File Teusink, Westerhoff, Snoep, Passarge, Reijenga, Esgalhado, van der Weijden, Schepper, Walsh, Bakker, van Dam, 2000
Can yeast glycolysis be understood in terms of in vitro kinetics of the constituent enzymes? Testing biochemistry.
PMR2 Exposure File Tolic, Mosekilde, Sturis, 2000
Modelling the Insulin-Glucose Feedback System: The Significance of Pulsatile Insulin Secretion
PMR2 Exposure File Topp, Promislow, de Vries, Miura, Finegood, 2000
A Model of Beta-Cell Mass, Insulin, and Glucose Kinetics: Paythways to Diabetes
PMR2 Exposure File Tran, Smith, Loiselle, Crampin, 2009
A metabolite-sensitive, thermodynamically-constrained model of cardiac cross-bridge cycling: Implications for force development during ischemia
PMR2 Exposure File van Beek, 2007
Adenine nucleotide-creatine-phosphate module in myocardial metabolic system explains fast phase of dynamic regulation of oxidative phosphorylation
PMR2 Exposure File Vaseghi, Baumeister, Rizzi, Reuss, 1999
In Vivo Dynamics of the Pentose Phosphate Pathway in Saccharomyces cerevisiae
PMR2 Exposure File Vinnakota, Kemp, Kushmeric, 2006
Dynamics of Muscle Glycogenolysis Modeled with pH Time Course Computation and pH-Dependent Reaction Equilibria and Enzyme Kinetics (Experiment 29, 0.2% Glycogen Phosphorylase A)
PMR2 Exposure File Vinnakota, Kemp, Kushmeric, 2006
Dynamics of Muscle Glycogenolysis Modeled with pH Time Course Computation and pH-Dependent Reaction Equilibria and Enzyme Kinetics (Experiment 29, 40% Glycogen Phosphorylase A)
PMR2 Exposure File Vinnakota, Kemp, Kushmeric, 2006
Dynamics of Muscle Glycogenolysis Modeled with pH Time Course Computation and pH-Dependent Reaction Equilibria and Enzyme Kinetics (Experiment 45)
PMR2 Exposure File Vinnakota, Rusk, Palmer, Shankland, Kushmeric, 2010
Common Phenotype of Resting Mouse EDL and SOL Muscles: EDL
PMR2 Exposure File Vinnakota, Rusk, Palmer, Shankland, Kushmeric, 2010
Common Phenotype of Resting Mouse EDL and SOL Muscles: SOL
PMR2 Exposure File Westermark, Lansner, 2003
A Model of Phosphofructokinase and Glycolytic Oscillations in the Pancreatic Beta-cell
PMR2 Exposure File Wierschem, Bertram, 2004
Complex bursting in pancreatic islets: a potential glycolytic mechanism
PMR2 Exposure File Wolf, Heinrich, 2000
Effect of cellular interaction on glycolytic oscillations in yeast: a theoretical investigation
PMR2 Exposure File Wolf, Passarge, Somsen, Snoep, Heinrich, Westerhoff, 2000
Transduction of Intracellular and Intercellular Dynamics in Yeast Glycolytic Oscillations
PMR2 Exposure File Wolf, Sohn, Heinrich, Kuriyama, 2001
Mathematical analysis of a mechanism for autonomous metabolic oscillations in continuous culture of Saccharomyces cerevisae
PMR2 Exposure File Wu, Jeneson, Beard, 2006
Oxidative ATP Synthesis in Skeletal Muscle is Controlled by Substrate Feedback
PMR2 Exposure File Wu, Yang, Vinnakota, Beard, 2007
Computer Modeling of Mitochondrial Tricarboxylic Acid Cycle, Oxidative Phosphorylation, Metabolite Transport, and Electrophysiology
PMR2 Exposure File Yang, Tong, McCarver, Hines, Beard, 2006
Population-Based Analysis of Methadone Distribution and Metabolism Using an Age-Dependent Physiologically Based Pharmacokinetic Model
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