Location: VPH-MIP case study on CellML @ eeb193d348e7 / experiments / voltage-clamp-graphs.xml

Author:

David Nickerson <nickerso@users.sourceforge.net>

Date:

2012-09-26 15:21:03+12:00

Desc:

renaming the tutorial web page to work around a bug in making PMR2 exposures with files named index.html

Permanent Source URI:

http://models.cellml.org/w/andre/VPH-MIP/rawfile/eeb193d348e735266eae6b9948908adc88bc4c00/experiments/voltage-clamp-graphs.xml

<?xml version="1.0" encoding="iso-8859-1"?>
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        <cg:title>Voltage Clamp</cg:title>
        <cmeta:modification rdf:parseType="Resource">
          <rdf:value>
            Adding more comprehensive metadata to the graph.
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            <vCard:FN>David Nickerson</vCard:FN>
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            Improving the graph description.
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            <vCard:FN>David Nickerson</vCard:FN>
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            This graph matches Figure 11(a,b) of the Hodgkin &amp; Huxley (1952) article and shows the total membrane current in response to membrane depolarisations of the specified magnitudes.
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            <cg:label>-5 mV</cg:label>
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            <cg:x-variable rdf:parseType="Resource">
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          <rdf:Description>
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    <cg:graph>
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        <cg:title>Voltage Clamp</cg:title>
        <cmeta:modification rdf:parseType="Resource">
          <rdf:value>
            Adding more comprehensive metadata to the graph.
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            <vCard:FN>David Nickerson</vCard:FN>
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          <rdf:value>
            Improving the graph description.
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          <cmeta:modifier rdf:parseType="Resource">
            <vCard:FN>David Nickerson</vCard:FN>
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            This graph matches Figure 11(c) of the Hodgkin &amp; Huxley (1952) article and shows the total membrane current in response to membrane depolarisations of the specified magnitudes.
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        <bqs:reference rdf:parseType="Resource">
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        <cmeta:bio_entity>giant nerve fibre</cmeta:bio_entity>
        <cg:x-label>Time (ms)</cg:x-label>
        <cg:y-label>Current (uA.cm^-2)</cg:y-label>
        <cg:background-colour>#ffffff</cg:background-colour>
        <cg:traces rdf:parseType="Collection">
          <rdf:Description>
            <cg:label>-20 mV</cg:label>
            <cg:type rdf:resource="http://www.cellml.org/metadata/graphs/1.0#line"/>
            <cg:colour>#ff0000</cg:colour>
            <cg:x-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="voltage-clamp-020.xml#simulation"/>
              <cg:variable rdf:resource="voltage-clamp.xml#time"/>
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              <cs:simulation rdf:resource="voltage-clamp-020.xml#simulation"/>
              <cg:variable rdf:resource="../components/voltage-clamp.xml#I"/>
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      <rdf:Description rdf:ID="voltage-clamp-currents-3">
        <cg:title>Voltage Clamp</cg:title>
        <cmeta:modification rdf:parseType="Resource">
          <rdf:value>
            Adding more comprehensive metadata to the graph.
          </rdf:value>
          <cmeta:modifier rdf:parseType="Resource">
            <vCard:FN>David Nickerson</vCard:FN>
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        <cmeta:modification rdf:parseType="Resource">
          <rdf:value>
            Improving the graph description.
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          <cmeta:modifier rdf:parseType="Resource">
            <vCard:FN>David Nickerson</vCard:FN>
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        <cmeta:comment rdf:parseType="Resource">
          <rdf:value>
            This graph matches Figure 11(d) of the Hodgkin &amp; Huxley (1952) article and shows the total membrane current in response to membrane depolarisations of the specified magnitudes.
          </rdf:value>
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        <bqs:reference rdf:parseType="Resource">
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        <cmeta:species>loligo</cmeta:species>
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        <cg:y-label>Current (uA.cm^-2)</cg:y-label>
        <cg:background-colour>#ffffff</cg:background-colour>
        <cg:traces rdf:parseType="Collection">
          <rdf:Description>
            <cg:label>-30 mV</cg:label>
            <cg:type rdf:resource="http://www.cellml.org/metadata/graphs/1.0#line"/>
            <cg:colour>#ff0000</cg:colour>
            <cg:x-variable rdf:parseType="Resource">
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            <cg:y-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="voltage-clamp-030.xml#simulation"/>
              <cg:variable rdf:resource="../components/voltage-clamp.xml#I"/>
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      </rdf:Description>
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    <cg:graph>
      <rdf:Description rdf:ID="voltage-clamp-currents-4">
        <cg:title>Voltage Clamp</cg:title>
        <cmeta:modification rdf:parseType="Resource">
          <rdf:value>
            Adding more comprehensive metadata to the graph.
          </rdf:value>
          <cmeta:modifier rdf:parseType="Resource">
            <vCard:FN>David Nickerson</vCard:FN>
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        <cmeta:modification rdf:parseType="Resource">
          <rdf:value>
            Improving the graph description.
          </rdf:value>
          <cmeta:modifier rdf:parseType="Resource">
            <vCard:FN>David Nickerson</vCard:FN>
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            <dcterms:W3CDTF>2008-07-31</dcterms:W3CDTF>
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        <cmeta:comment rdf:parseType="Resource">
          <rdf:value>
            This graph matches Figure 11(e,f) of the Hodgkin &amp; Huxley (1952) article and shows the total membrane current in response to membrane depolarisations of the specified magnitudes.
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        <bqs:reference rdf:parseType="Resource">
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        <cmeta:species>loligo</cmeta:species>
        <cmeta:bio_entity>giant nerve fibre</cmeta:bio_entity>
        <cg:x-label>Time (ms)</cg:x-label>
        <cg:y-label>Current (uA.cm^-2)</cg:y-label>
        <cg:background-colour>#ffffff</cg:background-colour>
        <cg:traces rdf:parseType="Collection">
          <rdf:Description>
            <cg:label>-40 mV</cg:label>
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            <cg:colour>#ff0000</cg:colour>
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            <cg:label>-60 mV</cg:label>
            <cg:type rdf:resource="http://www.cellml.org/metadata/graphs/1.0#line"/>
            <cg:colour>#0000ff</cg:colour>
            <cg:x-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="voltage-clamp-060.xml#simulation"/>
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              <cs:simulation rdf:resource="voltage-clamp-060.xml#simulation"/>
              <cg:variable rdf:resource="../components/voltage-clamp.xml#I"/>
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      <rdf:Description rdf:ID="voltage-clamp-currents-5">
        <cg:title>Voltage Clamp</cg:title>
        <cmeta:modification rdf:parseType="Resource">
          <rdf:value>
            Adding more comprehensive metadata to the graph.
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          <cmeta:modifier rdf:parseType="Resource">
            <vCard:FN>David Nickerson</vCard:FN>
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        <cmeta:modification rdf:parseType="Resource">
          <rdf:value>
            Improving the graph description.
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          <cmeta:modifier rdf:parseType="Resource">
            <vCard:FN>David Nickerson</vCard:FN>
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        <cmeta:comment rdf:parseType="Resource">
          <rdf:value>
            This graph matches Figure 11(g-j) of the Hodgkin &amp; Huxley (1952) article and shows the total membrane current in response to membrane depolarisations of the specified magnitudes.
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        </cmeta:comment>
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        <cmeta:species>loligo</cmeta:species>
        <cmeta:bio_entity>giant nerve fibre</cmeta:bio_entity>
        <cg:x-label>Time (ms)</cg:x-label>
        <cg:y-label>Current (uA.cm^-2)</cg:y-label>
        <cg:background-colour>#ffffff</cg:background-colour>
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            <cg:label>-80 mV</cg:label>
            <cg:type rdf:resource="http://www.cellml.org/metadata/graphs/1.0#line"/>
            <cg:colour>#ff0000</cg:colour>
            <cg:x-variable rdf:parseType="Resource">
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              <cg:variable rdf:resource="../components/voltage-clamp.xml#I"/>
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          <rdf:Description>
            <cg:label>-100 mV</cg:label>
            <cg:type rdf:resource="http://www.cellml.org/metadata/graphs/1.0#line"/>
            <cg:colour>#0000ff</cg:colour>
            <cg:x-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="voltage-clamp-100.xml#simulation"/>
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              <cg:variable rdf:resource="../components/voltage-clamp.xml#I"/>
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          <rdf:Description>
            <cg:label>-115 mV</cg:label>
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            <cg:colour>#008000</cg:colour>
            <cg:x-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="voltage-clamp-115.xml#simulation"/>
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              <cg:variable rdf:resource="../components/voltage-clamp.xml#I"/>
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          <rdf:Description>
            <cg:label>-130 mV</cg:label>
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            <cg:colour>#800080</cg:colour>
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