Location: Practical application of CellML 1.1: The integration of new mechanisms into a human ventricular myocyte model @ d6328d18c94e / IK1-pH_clamp-graphs.rdf

Author:

David Nickerson <nickerso@users.sourceforge.net>

Date:

2013-05-04 07:40:04+12:00

Desc:

adding initial TODO list to keep track of what I need to do to get things working with more recent tools than my original CellMLSimulator that I used in this paper

Permanent Source URI:

http://models.cellml.org/w/andre/nickerson-2008/rawfile/d6328d18c94e9dad70f4d0e4b250e89429773b62/IK1-pH_clamp-graphs.rdf

<?xml version="1.0" encoding="iso-8859-1"?>

<rdf:RDF
  xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
  xmlns:cs="http://www.cellml.org/metadata/simulation/1.0#"
  xmlns:cg="http://www.cellml.org/metadata/graphs/1.0#"
  xmlns:bqmodel="http://biomodels.net/model-qualifiers/">
  <rdf:Description>
    <cg:graph>
      <rdf:Description rdf:ID="IK1_pH_clamp_unit_amp">
        <cg:x-label>Intracellular proton concentration (mM)</cg:x-label>
        <cg:x-scaling>log10</cg:x-scaling>
        <cg:y-label>Relative unit amplitude ()</cg:y-label>
        <cg:background-colour>#ffffff</cg:background-colour>
        <cg:traces rdf:parseType="Collection">
          <rdf:Description>
            <cg:type rdf:resource="http://www.cellml.org/metadata/graphs/1.0#line"/>
            <cg:colour>#ff0000</cg:colour>
            <cg:line-type>1</cg:line-type>
            <cg:x-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="TNNP-extended/experiments/IK1-pH_clamp.xml#IK1_pH_clamp_simulation"/>
              <cg:variable rdf:resource="TNNP-extended/experiments/IK1-pH_clamp.xml#H_i"/>
              <!--
              <cg:minimum rdf:datatype="http://www.w3.org/2001/XMLSchema#double">450</cg:minimum>
              <cg:maximum rdf:datatype="http://www.w3.org/2001/XMLSchema#double">850</cg:maximum>
              -->
            </cg:x-variable>
            <cg:y-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="TNNP-extended/experiments/IK1-pH_clamp.xml#IK1_pH_clamp_simulation"/>
              <cg:variable rdf:resource="TNNP-extended/components/IK1.xml#IK1max"/>
            </cg:y-variable>
            <bqmodel:isDescribedBy>
              <rdf:Bag>
                <rdf:li rdf:resource="TNNP-extended/components/IK1-pH-fit-unit_amp.rdf"/>
              </rdf:Bag>
            </bqmodel:isDescribedBy>
          </rdf:Description>
        </cg:traces>
      </rdf:Description>
    </cg:graph>
    <cg:graph>
      <rdf:Description rdf:ID="IK1_pH_clamp_NPo">
        <cg:x-label>Intracellular proton concentration (mM)</cg:x-label>
        <cg:x-scaling>log10</cg:x-scaling>
        <cg:y-label>Relative open probability ()</cg:y-label>
        <cg:background-colour>#ffffff</cg:background-colour>
        <cg:traces rdf:parseType="Collection">
          <rdf:Description>
            <cg:type rdf:resource="http://www.cellml.org/metadata/graphs/1.0#line"/>
            <cg:colour>#ff0000</cg:colour>
            <cg:line-type>1</cg:line-type>
            <cg:x-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="TNNP-extended/experiments/IK1-pH_clamp.xml#IK1_pH_clamp_simulation"/>
              <cg:variable rdf:resource="TNNP-extended/experiments/IK1-pH_clamp.xml#H_i"/>
              <!--
              <cg:minimum rdf:datatype="http://www.w3.org/2001/XMLSchema#double">450</cg:minimum>
              <cg:maximum rdf:datatype="http://www.w3.org/2001/XMLSchema#double">850</cg:maximum>
              -->
            </cg:x-variable>
            <cg:y-variable rdf:parseType="Resource">
              <cs:simulation rdf:resource="TNNP-extended/experiments/IK1-pH_clamp.xml#IK1_pH_clamp_simulation"/>
              <cg:variable rdf:resource="TNNP-extended/components/IK1.xml#NPo"/>
            </cg:y-variable>
          </rdf:Description>
        </cg:traces>
      </rdf:Description>
    </cg:graph>
  </rdf:Description>
</rdf:RDF>