Location: Glucose Uptake in Enterocyte @ 4568124e8907 / AE1_flux.cellml
- Author:
- nima <nafs080@aucklanduni.ac.nz>
- Date:
- 2020-09-30 10:03:46+13:00
- Desc:
- Python codes for all of the figures
- Permanent Source URI:
- http://models.cellml.org/workspace/572/rawfile/4568124e89078937eba5e8c13ac1641120fc2f49/AE1_flux.cellml
<?xml version='1.0'?>
<model name="AE1_flux" xmlns="http://www.cellml.org/cellml/1.1#" xmlns:cellml="http://www.cellml.org/cellml/1.1#">
<component name="AE1">
<variable name="A_Apical" public_interface="in" units="m2"/>
<variable name="v_cell" public_interface="in" units="m3"/>
<variable name="HCO3_i" public_interface="in" units="M"/>
<variable name="HCO3_m" public_interface="in" units="M"/>
<variable name="Cl_i" public_interface="in" units="M"/>
<variable name="Cl_m" public_interface="in" units="M"/>
<variable name="J_AE1_HCO3" public_interface="out" units="umol_per_s"/>
<!--var J_AE1_HCO31: umol_per_s {pub: out};-->
<variable name="J_AE1_Cl" public_interface="out" units="umol_per_s"/>
<!--var J_AE1_Cl1: umol_per_s {pub: out};-->
<variable name="I_AE1_HCO3" public_interface="out" units="uA"/>
<variable name="I_AE1_Cl" public_interface="out" units="uA"/>
<variable name="J_HCO3_influx" public_interface="out" units="umol_per_s"/>
<variable name="J_Cl_influx" public_interface="out" units="umol_per_s"/>
<variable initial_value="0.198" name="K_HCO3_m" units="M"/>
<variable initial_value="0.198" name="K_HCO3_i" units="M"/>
<variable initial_value="0.05" name="K_Cl_s" units="M"/>
<variable initial_value="0.05" name="K_Cl_i" units="M"/>
<variable initial_value="1247" name="P_HCO3_m" units="per_second"/>
<variable initial_value="135" name="P_HCO3_i" units="per_second"/>
<variable initial_value="562" name="P_Cl_s" units="per_second"/>
<variable initial_value="61" name="P_Cl_i" units="per_second"/>
<variable name="beta_ext" units="dimensionless"/>
<variable name="beta_int" units="dimensionless"/>
<variable name="gamma_ext" units="dimensionless"/>
<variable name="gamma_int" units="dimensionless"/>
<variable name="sigma" units="per_second"/>
<variable initial_value="0.001" name="x_Tmax" units="M"/>
<variable initial_value="0.172" name="K_I" units="M"/>
<variable name="x_T" units="M"/>
<variable name="x_ext" units="M"/>
<variable name="x_int" units="M"/>
<variable name="Jo_bm" units="umol_per_s"/>
<variable name="Ji_bm" units="umol_per_s"/>
<variable name="Js_bm" units="umol_per_s"/>
<variable name="Jo_cm" units="umol_per_s"/>
<variable name="Ji_cm" units="umol_per_s"/>
<variable name="Js_cm" units="umol_per_s"/>
<variable name="F" public_interface="in" units="C_per_mol"/>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<eq/>
<ci>x_T</ci>
<apply>
<divide/>
<ci>x_Tmax</ci>
<apply>
<plus/>
<cn cellml:units="dimensionless">1</cn>
<apply>
<divide/>
<ci>HCO3_i</ci>
<ci>K_I</ci>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>beta_ext</ci>
<apply>
<divide/>
<ci>HCO3_m</ci>
<ci>K_HCO3_m</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>beta_int</ci>
<apply>
<divide/>
<ci>HCO3_i</ci>
<ci>K_HCO3_i</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>gamma_ext</ci>
<apply>
<divide/>
<ci>Cl_m</ci>
<ci>K_Cl_s</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>gamma_int</ci>
<apply>
<divide/>
<ci>Cl_i</ci>
<ci>K_Cl_i</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>sigma</ci>
<apply>
<plus/>
<apply>
<times/>
<apply>
<plus/>
<cn cellml:units="dimensionless">1</cn>
<ci>beta_ext</ci>
<ci>gamma_ext</ci>
</apply>
<apply>
<plus/>
<apply>
<times/>
<ci>P_HCO3_i</ci>
<ci>beta_int</ci>
</apply>
<apply>
<times/>
<ci>P_Cl_i</ci>
<ci>gamma_int</ci>
</apply>
</apply>
</apply>
<apply>
<times/>
<apply>
<plus/>
<cn cellml:units="dimensionless">1</cn>
<ci>beta_int</ci>
<ci>gamma_int</ci>
</apply>
<apply>
<plus/>
<apply>
<times/>
<ci>P_HCO3_m</ci>
<ci>beta_ext</ci>
</apply>
<apply>
<times/>
<ci>P_Cl_s</ci>
<ci>gamma_ext</ci>
</apply>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>J_AE1_HCO3</ci>
<apply>
<times/>
<apply>
<divide/>
<apply>
<times/>
<cn cellml:units="dimensionless" type="e-notation">1<sep/>9</cn>
<ci>v_cell</ci>
<ci>x_Tmax</ci>
</apply>
<ci>sigma</ci>
</apply>
<apply>
<minus/>
<apply>
<times/>
<ci>P_HCO3_i</ci>
<ci>beta_int</ci>
<ci>P_Cl_s</ci>
<ci>gamma_ext</ci>
</apply>
<apply>
<times/>
<ci>P_HCO3_m</ci>
<ci>beta_ext</ci>
<ci>P_Cl_i</ci>
<ci>gamma_int</ci>
</apply>
</apply>
</apply>
</apply>
<!--J_AE1_HCO31 = J_AE1_HCO3*36e8{dimensionless};
J_AE1_Cl1 = -J_AE1_HCO31;-->
<apply>
<eq/>
<ci>J_AE1_Cl</ci>
<ci>J_AE1_HCO3</ci>
</apply>
<apply>
<eq/>
<ci>I_AE1_HCO3</ci>
<apply>
<times/>
<ci>J_AE1_HCO3</ci>
<ci>F</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>I_AE1_Cl</ci>
<apply>
<times/>
<ci>J_AE1_Cl</ci>
<ci>F</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>x_ext</ci>
<apply>
<divide/>
<apply>
<times/>
<ci>x_T</ci>
<apply>
<plus/>
<apply>
<times/>
<ci>P_HCO3_i</ci>
<ci>beta_int</ci>
</apply>
<apply>
<times/>
<ci>P_Cl_i</ci>
<ci>gamma_int</ci>
</apply>
</apply>
</apply>
<ci>sigma</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>x_int</ci>
<apply>
<divide/>
<apply>
<times/>
<ci>x_T</ci>
<apply>
<plus/>
<apply>
<times/>
<ci>P_HCO3_m</ci>
<ci>beta_ext</ci>
</apply>
<apply>
<times/>
<ci>P_Cl_s</ci>
<ci>gamma_ext</ci>
</apply>
</apply>
</apply>
<ci>sigma</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>J_HCO3_influx</ci>
<apply>
<times/>
<apply>
<divide/>
<ci>x_T</ci>
<ci>sigma</ci>
</apply>
<ci>P_HCO3_m</ci>
<ci>beta_ext</ci>
<apply>
<plus/>
<apply>
<times/>
<ci>P_HCO3_i</ci>
<ci>beta_int</ci>
</apply>
<apply>
<times/>
<ci>P_Cl_i</ci>
<ci>gamma_int</ci>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>J_Cl_influx</ci>
<apply>
<times/>
<apply>
<divide/>
<ci>x_T</ci>
<ci>sigma</ci>
</apply>
<ci>P_Cl_s</ci>
<ci>gamma_ext</ci>
<apply>
<plus/>
<apply>
<times/>
<ci>P_HCO3_i</ci>
<ci>beta_int</ci>
</apply>
<apply>
<times/>
<ci>P_Cl_i</ci>
<ci>gamma_int</ci>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>Jo_bm</ci>
<apply>
<power/>
<apply>
<times/>
<apply>
<divide/>
<cn cellml:units="dimensionless">1</cn>
<ci>x_T</ci>
</apply>
<apply>
<plus/>
<apply>
<divide/>
<cn cellml:units="dimensionless">1</cn>
<ci>P_HCO3_m</ci>
</apply>
<apply>
<divide/>
<cn cellml:units="dimensionless">1</cn>
<ci>P_HCO3_i</ci>
</apply>
<apply>
<divide/>
<ci>K_HCO3_i</ci>
<apply>
<times/>
<ci>P_HCO3_i</ci>
<ci>HCO3_i</ci>
</apply>
</apply>
</apply>
</apply>
<apply>
<minus/>
<cn cellml:units="dimensionless">1</cn>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>Ji_bm</ci>
<apply>
<power/>
<apply>
<times/>
<apply>
<divide/>
<cn cellml:units="dimensionless">1</cn>
<ci>x_T</ci>
</apply>
<apply>
<plus/>
<apply>
<divide/>
<cn cellml:units="dimensionless">1</cn>
<ci>P_HCO3_m</ci>
</apply>
<apply>
<divide/>
<cn cellml:units="dimensionless">1</cn>
<ci>P_HCO3_i</ci>
</apply>
<apply>
<divide/>
<ci>K_HCO3_m</ci>
<apply>
<times/>
<ci>P_HCO3_m</ci>
<ci>HCO3_m</ci>
</apply>
</apply>
</apply>
</apply>
<apply>
<minus/>
<cn cellml:units="dimensionless">1</cn>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>Js_bm</ci>
<apply>
<power/>
<apply>
<times/>
<apply>
<divide/>
<cn cellml:units="dimensionless">1</cn>
<ci>x_T</ci>
</apply>
<apply>
<plus/>
<apply>
<divide/>
<cn cellml:units="dimensionless">1</cn>
<ci>P_HCO3_m</ci>
</apply>
<apply>
<divide/>
<cn cellml:units="dimensionless">1</cn>
<ci>P_HCO3_i</ci>
</apply>
</apply>
</apply>
<apply>
<minus/>
<cn cellml:units="dimensionless">1</cn>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>Jo_cm</ci>
<apply>
<power/>
<apply>
<times/>
<apply>
<divide/>
<cn cellml:units="dimensionless">1</cn>
<ci>x_T</ci>
</apply>
<apply>
<plus/>
<apply>
<divide/>
<cn cellml:units="dimensionless">1</cn>
<ci>P_Cl_s</ci>
</apply>
<apply>
<divide/>
<cn cellml:units="dimensionless">1</cn>
<ci>P_Cl_i</ci>
</apply>
<apply>
<divide/>
<ci>K_Cl_i</ci>
<apply>
<times/>
<ci>P_Cl_i</ci>
<ci>Cl_i</ci>
</apply>
</apply>
</apply>
</apply>
<apply>
<minus/>
<cn cellml:units="dimensionless">1</cn>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>Ji_cm</ci>
<apply>
<power/>
<apply>
<times/>
<apply>
<divide/>
<cn cellml:units="dimensionless">1</cn>
<ci>x_T</ci>
</apply>
<apply>
<plus/>
<apply>
<divide/>
<cn cellml:units="dimensionless">1</cn>
<ci>P_Cl_s</ci>
</apply>
<apply>
<divide/>
<cn cellml:units="dimensionless">1</cn>
<ci>P_Cl_i</ci>
</apply>
<apply>
<divide/>
<ci>K_Cl_s</ci>
<apply>
<times/>
<ci>P_Cl_s</ci>
<ci>Cl_m</ci>
</apply>
</apply>
</apply>
</apply>
<apply>
<minus/>
<cn cellml:units="dimensionless">1</cn>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>Js_cm</ci>
<apply>
<power/>
<apply>
<times/>
<apply>
<divide/>
<cn cellml:units="dimensionless">1</cn>
<ci>x_T</ci>
</apply>
<apply>
<plus/>
<apply>
<divide/>
<cn cellml:units="dimensionless">1</cn>
<ci>P_Cl_s</ci>
</apply>
<apply>
<divide/>
<cn cellml:units="dimensionless">1</cn>
<ci>P_Cl_i</ci>
</apply>
</apply>
</apply>
<apply>
<minus/>
<cn cellml:units="dimensionless">1</cn>
</apply>
</apply>
</apply>
</math>
</component>
</model>