Location: semantic-annotation @ f42c82f77870 / model.cellml

Author:
Dewan Sarwar <sarwarcse@gmail.com>
Date:
2019-01-22 15:53:48+13:00
Desc:
adding the removed namepsaces
Permanent Source URI:
http://models.cellml.org/workspace/584/rawfile/f42c82f77870f412e1964b9b0701fec331344c8d/model.cellml

<?xml version="1.0" encoding="UTF-8"?>
<model xmlns="http://www.cellml.org/cellml/2.0#" name="model" id="model">
    <units name="mmol_per_cm3">
        <unit exponent="-3" prefix="centi" units="metre"/>
        <unit prefix="milli" units="mole"/>
    </units>
    <units name="flux">
        <unit exponent="-1" units="second"/>
        <unit exponent="-3" prefix="centi" units="metre"/>
        <unit prefix="milli" units="mole"/>
    </units>
    <component name="environment">
        <variable name="time" units="second" interface="public" id="environment.time"/>
    </component>
    <component xmlns="" name="modelComp">
        <variable name="C_m_Sodium" units="mmol_per_cm3" interface="public" id="modelComp.C_m_Sodium"/>
        <variable name="C_c_Sodium" units="mmol_per_cm3" interface="public" id="modelComp.C_c_Sodium"/>
        <variable name="C_m_Potassium" units="mmol_per_cm3" interface="public" id="modelComp.C_m_Potassium"/>
        <variable name="C_c_Potassium" units="mmol_per_cm3" interface="public" id="modelComp.C_c_Potassium"/>
        <variable name="J_Sodium" units="flux" interface="public" id="modelComp.J_Sodium"/>
        <variable name="J_Potassium" units="flux" interface="public" id="modelComp.J_Potassium"/>
        <variable name="time" units="second" interface="public" id="modelComp.time"/>
        <math xmls="http://www.w3.org/1998/Math/MathML">&lt;!--Please fill out this section--&gt;</math>
    </component>
    <connection xmlns="">&lt;!--Please fill out this section--&gt;</connection>
    <rdf:RDF xmlns:bqmodel="http://biomodels.net/model-qualifiers/"
             xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:ro="http://www.obofoundry.org/ro/ro.owl#"
             xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqs="http://www.cellml.org/bqs/1.0#"
             xmlns:semsim="http://www.bhi.washington.edu/SemSim#" xmlns:dcterms="http://purl.org/dc/terms/"
             xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:opb="http://bhi.washington.edu/OPB#">
        <rdf:Description rdf:about="#environment.time" dcterms:description="Time">
            <semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_01023"/>
        </rdf:Description>
        <rdf:Description xmlns="" rdf:about="#modelComp.J_Potassium">
            <semsim:isComputationalComponentFor>
                <rdf:Description rdf:about="#Property_5">
                    <semsim:physicalPropertyOf>
                        <rdf:Description rdf:about="#process_1" dcterms:description="">
                            <semsim:hasMediatorParticipant>
                                <rdf:Description rdf:about="#mediator_3">
                                    <semsim:hasPhysicalEntityReference rdf:resource="#entity_5"/>
                                </rdf:Description>
                            </semsim:hasMediatorParticipant>
                            <semsim:hasMediatorParticipant>
                                <rdf:Description rdf:about="#mediator_2">
                                    <semsim:hasPhysicalEntityReference rdf:resource="#entity_3"/>
                                </rdf:Description>
                            </semsim:hasMediatorParticipant>
                            <semsim:hasSinkParticipant>
                                <rdf:Description rdf:about="#sink_1" semsim:hasMultiplier="1.0">
                                    <semsim:hasPhysicalEntityReference rdf:resource="#entity_9"/>
                                </rdf:Description>
                            </semsim:hasSinkParticipant>
                            <semsim:hasSourceParticipant>
                                <rdf:Description rdf:about="#source_1" semsim:hasMultiplier="1.0">
                                    <semsim:hasPhysicalEntityReference rdf:resource="#entity_8"/>
                                </rdf:Description>
                            </semsim:hasSourceParticipant>
                            <semsim:name>Potassium flow through Apical plasma membrane</semsim:name>
                        </rdf:Description>
                    </semsim:physicalPropertyOf>
                    <semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00593"/>
                </rdf:Description>
            </semsim:isComputationalComponentFor>
            <dcterms:description>Flux of Potassium from Luminal to Cytosol through Apical plasma membrane and
                sodium/glucose cotransporter 4
            </dcterms:description>
        </rdf:Description>
        <rdf:Description xmlns="" rdf:about="#modelComp.J_Sodium">
            <semsim:isComputationalComponentFor>
                <rdf:Description rdf:about="#Property_4">
                    <semsim:physicalPropertyOf>
                        <rdf:Description rdf:about="#process_0" dcterms:description="">
                            <semsim:hasMediatorParticipant>
                                <rdf:Description rdf:about="#mediator_1">
                                    <semsim:hasPhysicalEntityReference>
                                        <rdf:Description rdf:about="#entity_5">
                                            <semsim:hasPhysicalDefinition
                                                    rdf:resource="http://purl.obolibrary.org/obo/PR_Q8VDT1"/>
                                        </rdf:Description>
                                    </semsim:hasPhysicalEntityReference>
                                </rdf:Description>
                            </semsim:hasMediatorParticipant>
                            <semsim:hasMediatorParticipant>
                                <rdf:Description rdf:about="#mediator_0">
                                    <semsim:hasPhysicalEntityReference>
                                        <rdf:Description rdf:about="#entity_3">
                                            <semsim:hasPhysicalDefinition
                                                    rdf:resource="http://purl.obolibrary.org/obo/FMA_84666"/>
                                        </rdf:Description>
                                    </semsim:hasPhysicalEntityReference>
                                </rdf:Description>
                            </semsim:hasMediatorParticipant>
                            <semsim:hasSinkParticipant>
                                <rdf:Description rdf:about="#sink_0" semsim:hasMultiplier="1.0">
                                    <semsim:hasPhysicalEntityReference rdf:resource="#entity_7"/>
                                </rdf:Description>
                            </semsim:hasSinkParticipant>
                            <semsim:hasSourceParticipant>
                                <rdf:Description rdf:about="#source_0" semsim:hasMultiplier="1.0">
                                    <semsim:hasPhysicalEntityReference rdf:resource="#entity_6"/>
                                </rdf:Description>
                            </semsim:hasSourceParticipant>
                            <semsim:name>Sodium flow through Apical plasma membrane</semsim:name>
                        </rdf:Description>
                    </semsim:physicalPropertyOf>
                    <semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00593"/>
                </rdf:Description>
            </semsim:isComputationalComponentFor>
            <dcterms:description>Flux of Sodium from Luminal to Cytosol through Apical plasma membrane and
                sodium/glucose cotransporter 4
            </dcterms:description>
        </rdf:Description>
        <rdf:Description xmlns="" rdf:about="#model">
            <ro:modelOf rdf:resource="http://purl.obolibrary.org/obo/PR_Q8VDT1"/>
            <ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_74550"/>
            <ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_66836"/>
            <ro:compartmentOf rdf:resource="http://purl.obolibrary.org/obo/FMA_9673"/>
        </rdf:Description>
        <rdf:Description xmlns="" rdf:about="#modelComp.C_c_Potassium">
            <semsim:isComputationalComponentFor>
                <rdf:Description rdf:about="#property_3">
                    <semsim:physicalPropertyOf>
                        <rdf:Description rdf:about="#entity_9">
                            <ro:part_of>
                                <rdf:Description rdf:about="#entity_1">
                                    <semsim:hasPhysicalDefinition
                                            rdf:resource="http://purl.obolibrary.org/obo/FMA_66836"/>
                                </rdf:Description>
                            </ro:part_of>
                            <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/CHEBI_29103"/>
                        </rdf:Description>
                    </semsim:physicalPropertyOf>
                    <semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00340"/>
                </rdf:Description>
            </semsim:isComputationalComponentFor>
            <dcterms:description>Concentration of Potassium in the Cytosol compartment</dcterms:description>
        </rdf:Description>
        <rdf:Description xmlns="" rdf:about="#modelComp.C_m_Potassium">
            <semsim:isComputationalComponentFor>
                <rdf:Description rdf:about="#property_2">
                    <semsim:physicalPropertyOf>
                        <rdf:Description rdf:about="#entity_8">
                            <ro:part_of>
                                <rdf:Description rdf:about="#entity_0">
                                    <semsim:hasPhysicalDefinition
                                            rdf:resource="http://purl.obolibrary.org/obo/FMA_74550"/>
                                </rdf:Description>
                            </ro:part_of>
                            <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/CHEBI_29103"/>
                        </rdf:Description>
                    </semsim:physicalPropertyOf>
                    <semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00340"/>
                </rdf:Description>
            </semsim:isComputationalComponentFor>
            <dcterms:description>Concentration of Potassium in the Luminal compartment</dcterms:description>
        </rdf:Description>
        <rdf:Description xmlns="" rdf:about="#modelComp.C_c_Sodium">
            <semsim:isComputationalComponentFor>
                <rdf:Description rdf:about="#property_1">
                    <semsim:physicalPropertyOf>
                        <rdf:Description rdf:about="#entity_7">
                            <ro:part_of>
                                <rdf:Description rdf:about="#entity_1">
                                    <semsim:hasPhysicalDefinition
                                            rdf:resource="http://purl.obolibrary.org/obo/FMA_66836"/>
                                </rdf:Description>
                            </ro:part_of>
                            <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/CHEBI_29101"/>
                        </rdf:Description>
                    </semsim:physicalPropertyOf>
                    <semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00340"/>
                </rdf:Description>
            </semsim:isComputationalComponentFor>
            <dcterms:description>Concentration of Sodium in the Cytosol compartment</dcterms:description>
        </rdf:Description>
        <rdf:Description xmlns="" rdf:about="#modelComp.C_m_Sodium">
            <semsim:isComputationalComponentFor>
                <rdf:Description rdf:about="#property_0">
                    <semsim:physicalPropertyOf>
                        <rdf:Description rdf:about="#entity_6">
                            <ro:part_of>
                                <rdf:Description rdf:about="#entity_0">
                                    <semsim:hasPhysicalDefinition
                                            rdf:resource="http://purl.obolibrary.org/obo/FMA_74550"/>
                                </rdf:Description>
                            </ro:part_of>
                            <semsim:hasPhysicalDefinition rdf:resource="http://purl.obolibrary.org/obo/CHEBI_29101"/>
                        </rdf:Description>
                    </semsim:physicalPropertyOf>
                    <semsim:hasPhysicalDefinition rdf:resource="http://identifiers.org/opb/OPB_00340"/>
                </rdf:Description>
            </semsim:isComputationalComponentFor>
            <dcterms:description>Concentration of Sodium in the Luminal compartment</dcterms:description>
        </rdf:Description>
    </rdf:RDF>
</model>