- Author:
- Shelley Fong <s.fong@auckland.ac.nz>
- Date:
- 2022-02-18 14:17:34+13:00
- Desc:
- Updating way cellml is written
- Permanent Source URI:
- http://models.cellml.org/workspace/7a8/rawfile/8bb03dd23f61cba2ac9583321a845c02ff6f4155/FCU_EC_coupling.sedml
<?xml version='1.0' encoding='UTF-8'?>
<sedML level="1" version="3" xmlns="http://sed-ml.org/sed-ml/level1/version3" xmlns:cellml="http://www.cellml.org/cellml/1.1#">
<listOfSimulations>
<uniformTimeCourse id="simulation1" initialTime="0" numberOfPoints="35000" outputEndTime="0.035" outputStartTime="0">
<annotation>
<nlaSolver name="KINSOL" xmlns="http://www.opencor.ws/">
<solverProperty id="LinearSolver" value="Dense"/>
<solverProperty id="LowerHalfBandwidth" value="0"/>
<solverProperty id="MaximumNumberOfIterations" value="200"/>
<solverProperty id="UpperHalfBandwidth" value="0"/>
</nlaSolver>
</annotation>
<algorithm kisaoID="KISAO:0000019">
<listOfAlgorithmParameters>
<algorithmParameter kisaoID="KISAO:0000211" value="1e-07"/>
<algorithmParameter kisaoID="KISAO:0000475" value="BDF"/>
<algorithmParameter kisaoID="KISAO:0000481" value="true"/>
<algorithmParameter kisaoID="KISAO:0000476" value="Newton"/>
<algorithmParameter kisaoID="KISAO:0000477" value="Dense"/>
<algorithmParameter kisaoID="KISAO:0000480" value="0"/>
<algorithmParameter kisaoID="KISAO:0000415" value="500"/>
<algorithmParameter kisaoID="KISAO:0000467" value="1e-05"/>
<algorithmParameter kisaoID="KISAO:0000478" value="Banded"/>
<algorithmParameter kisaoID="KISAO:0000209" value="1e-07"/>
<algorithmParameter kisaoID="KISAO:0000479" value="0"/>
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</algorithm>
</uniformTimeCourse>
<oneStep id="simulation2" step="6.93889390390723e-18">
<annotation>
<nlaSolver name="KINSOL" xmlns="http://www.opencor.ws/">
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</annotation>
<algorithm kisaoID="KISAO:0000019">
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<algorithmParameter kisaoID="KISAO:0000475" value="BDF"/>
<algorithmParameter kisaoID="KISAO:0000481" value="true"/>
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<algorithmParameter kisaoID="KISAO:0000477" value="Dense"/>
<algorithmParameter kisaoID="KISAO:0000480" value="0"/>
<algorithmParameter kisaoID="KISAO:0000415" value="500"/>
<algorithmParameter kisaoID="KISAO:0000467" value="1e-05"/>
<algorithmParameter kisaoID="KISAO:0000478" value="Banded"/>
<algorithmParameter kisaoID="KISAO:0000209" value="1e-07"/>
<algorithmParameter kisaoID="KISAO:0000479" value="0"/>
</listOfAlgorithmParameters>
</algorithm>
</oneStep>
</listOfSimulations>
<listOfModels>
<model id="model" language="urn:sedml:language:cellml.1_1" source="FCU_EC_coupling.cellml"/>
</listOfModels>
<listOfTasks>
<repeatedTask id="repeatedTask" range="once" resetModel="true">
<listOfRanges>
<vectorRange id="once">
<value> 1 </value>
</vectorRange>
</listOfRanges>
<listOfSubTasks>
<subTask order="1" task="task1"/>
<subTask order="2" task="task2"/>
</listOfSubTasks>
</repeatedTask>
<task id="task1" modelReference="model" simulationReference="simulation1"/>
<task id="task2" modelReference="model" simulationReference="simulation2"/>
</listOfTasks>
<listOfDataGenerators>
<dataGenerator id="xDataGenerator1_1">
<listOfVariables>
<variable id="xVariable1_1" target="/cellml:model/cellml:component[@name='environment']/cellml:variable[@name='time']" taskReference="repeatedTask"/>
</listOfVariables>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> xVariable1_1 </ci>
</math>
</dataGenerator>
<dataGenerator id="yDataGenerator1_1">
<listOfVariables>
<variable id="yVariable1_1" target="/cellml:model/cellml:component[@name='environment']/cellml:variable[@name='V_m']" taskReference="repeatedTask"/>
</listOfVariables>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> yVariable1_1 </ci>
</math>
</dataGenerator>
<dataGenerator id="xDataGenerator2_1">
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<variable id="xVariable2_1" target="/cellml:model/cellml:component[@name='environment']/cellml:variable[@name='time']" taskReference="repeatedTask"/>
</listOfVariables>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> xVariable2_1 </ci>
</math>
</dataGenerator>
<dataGenerator id="yDataGenerator2_1">
<listOfVariables>
<variable id="yVariable2_1" target="/cellml:model/cellml:component[@name='environment']/cellml:variable[@name='q_Ca_TRPN']" taskReference="repeatedTask"/>
</listOfVariables>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> yVariable2_1 </ci>
</math>
</dataGenerator>
<dataGenerator id="xDataGenerator3_1">
<listOfVariables>
<variable id="xVariable3_1" target="/cellml:model/cellml:component[@name='environment']/cellml:variable[@name='time']" taskReference="repeatedTask"/>
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<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> xVariable3_1 </ci>
</math>
</dataGenerator>
<dataGenerator id="yDataGenerator3_1">
<listOfVariables>
<variable id="yVariable3_1" target="/cellml:model/cellml:component[@name='environment']/cellml:variable[@name='I_pulse']" taskReference="repeatedTask"/>
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<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> yVariable3_1 </ci>
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</dataGenerator>
<dataGenerator id="xDataGenerator4_1">
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<ci> xVariable4_1 </ci>
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</dataGenerator>
<dataGenerator id="yDataGenerator4_1">
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<variable id="yVariable4_1" target="/cellml:model/cellml:component[@name='environment']/cellml:variable[@name='PLB_T']" taskReference="repeatedTask"/>
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<ci> yVariable4_1 </ci>
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<dataGenerator id="xDataGenerator4_2">
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<dataGenerator id="yDataGenerator4_2">
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<ci> yVariable4_2 </ci>
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<dataGenerator id="xDataGenerator5_1">
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<dataGenerator id="yDataGenerator5_1">
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<dataGenerator id="xDataGenerator5_2">
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<dataGenerator id="yDataGenerator5_2">
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<ci> yVariable5_2 </ci>
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</dataGenerator>
<dataGenerator id="xDataGenerator5_3">
<listOfVariables>
<variable id="xVariable5_3" target="/cellml:model/cellml:component[@name='environment']/cellml:variable[@name='time']" taskReference="repeatedTask"/>
</listOfVariables>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> xVariable5_3 </ci>
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</dataGenerator>
<dataGenerator id="yDataGenerator5_3">
<listOfVariables>
<variable id="yVariable5_3" target="/cellml:model/cellml:component[@name='environment']/cellml:variable[@name='q_Cai']" taskReference="repeatedTask"/>
</listOfVariables>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> yVariable5_3 </ci>
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</dataGenerator>
<dataGenerator id="xDataGenerator5_4">
<listOfVariables>
<variable id="xVariable5_4" target="/cellml:model/cellml:component[@name='environment']/cellml:variable[@name='time']" taskReference="repeatedTask"/>
</listOfVariables>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> xVariable5_4 </ci>
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</dataGenerator>
<dataGenerator id="yDataGenerator5_4">
<listOfVariables>
<variable id="yVariable5_4" target="/cellml:model/cellml:component[@name='environment']/cellml:variable[@name='q_Cao']" taskReference="repeatedTask"/>
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</dataGenerator>
<dataGenerator id="xDataGenerator6_1">
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<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> xVariable6_1 </ci>
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</dataGenerator>
<dataGenerator id="yDataGenerator6_1">
<listOfVariables>
<variable id="yVariable6_1" target="/cellml:model/cellml:component[@name='environment']/cellml:variable[@name='Tension']" taskReference="repeatedTask"/>
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<math xmlns="http://www.w3.org/1998/Math/MathML">
<ci> yVariable6_1 </ci>
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</listOfDataGenerators>
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<gridLines>
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<title/>
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<annotation>
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