Location: Calcium Dynamics Annotations @ 110f9ba31e34 / colegrove_albrecht_friel_2000 / model / colegrove_albrecht_friel_2000.rdf

Author:
neilstephen2001 <npar276@aucklanduni.ac.nz>
Date:
2021-01-24 21:37:35+13:00
Desc:
adding OMEX archives to workspace
Permanent Source URI:
http://models.cellml.org/workspace/7f1/rawfile/110f9ba31e34b7499c8d02e13a6b9984351c0e8f/colegrove_albrecht_friel_2000/model/colegrove_albrecht_friel_2000.rdf

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    <semsim:unknown>Quantitative analysis of mitochondrial Ca2+ uptake and release.</semsim:unknown>
    <semsim:unknown>sympathetic neuron</semsim:unknown>
    <semsim:hasCellMLdocumentation>&lt;documentation xmlns="http://cellml.org/tmp-documentation"&gt;&#xD;
  &lt;article&gt;&#xD;
    &lt;articleinfo&gt;&#xD;
      &lt;title&gt;Quantitative Analysis Of Mitochondrial Ca2+ Uptake And Release Pathways In Sympathetic Neurons&lt;/title&gt;&#xD;
      &lt;author&gt;&#xD;
        &lt;firstname&gt;Catherine&lt;/firstname&gt;&#xD;
        &lt;surname&gt;Lloyd&lt;/surname&gt;&#xD;
        &lt;affiliation&gt;&#xD;
          &lt;shortaffil&gt;Bioengineering Institute, University of Auckland&lt;/shortaffil&gt;&#xD;
        &lt;/affiliation&gt;&#xD;
      &lt;/author&gt;&#xD;
    &lt;/articleinfo&gt;&#xD;
    &lt;section id="sec_status"&gt;&#xD;
      &lt;title&gt;Model Status&lt;/title&gt;&#xD;
      &lt;para&gt;This model can not be solved as it is unsuitably constrained.&lt;/para&gt;&#xD;
      &lt;para&gt;ValidateCellML verifies this model as valid CellML with consistent units.&lt;/para&gt;&#xD;
    &lt;/section&gt;&#xD;
    &lt;sect1 id="sec_structure"&gt;&#xD;
      &lt;title&gt;Model Structure&lt;/title&gt;&#xD;
      &lt;para&gt;&#xD;
        One of the central goals in the study of calcium signalling is to understand the basis of [Ca&#xD;
        &lt;superscript&gt;2+&lt;/superscript&gt;&#xD;
        ] dynamics.  This is complicated by the fact that Ca&#xD;
        &lt;superscript&gt;2+&lt;/superscript&gt;&#xD;
        is present in several membrane-bound intracellular compartments, each of which uses a distinct Ca&#xD;
        &lt;superscript&gt;2+&lt;/superscript&gt;&#xD;
        transport system and the rate of Ca&#xD;
        &lt;superscript&gt;2+&lt;/superscript&gt;&#xD;
        transport between these compartments can exhibit a complex non-linear dependence on free [Ca&#xD;
        &lt;superscript&gt;2+&lt;/superscript&gt;&#xD;
        ].&#xD;
      &lt;/para&gt;&#xD;
      &lt;para&gt;&#xD;
        In their 2000 model, Stephen L. Colegrove, Meredith A. Albrecht and David D. Friel have studied how mitochondrial Ca&#xD;
        &lt;superscript&gt;2+&lt;/superscript&gt;&#xD;
        transport contributes to the redistribution of intracellular Ca&#xD;
        &lt;superscript&gt;2+&lt;/superscript&gt;&#xD;
        during and after depolarisation-evoked Ca&#xD;
        &lt;superscript&gt;2+&lt;/superscript&gt;&#xD;
        entry in sympathetic neurons.  The total Ca&#xD;
        &lt;superscript&gt;2+&lt;/superscript&gt;&#xD;
        flux during the recovery phase following membrane depolarisation was divided into three components (see&#xD;
        &lt;xref linkend="fig_cell_diagram" /&gt;&#xD;
        below): one representing net Ca&#xD;
        &lt;superscript&gt;2+&lt;/superscript&gt;&#xD;
        extrusion across the plasma membrane (J&#xD;
        &lt;subscript&gt;extru&lt;/subscript&gt;&#xD;
        ), one representing mitochondrial Ca&#xD;
        &lt;superscript&gt;2+&lt;/superscript&gt;&#xD;
        uptake via the uniporter (J&#xD;
        &lt;subscript&gt;uni&lt;/subscript&gt;&#xD;
        ) and one representing mitochondrial Ca&#xD;
        &lt;superscript&gt;2+&lt;/superscript&gt;&#xD;
        release via the Na&#xD;
        &lt;superscript&gt;+&lt;/superscript&gt;&#xD;
        /Ca&#xD;
        &lt;superscript&gt;2+&lt;/superscript&gt;&#xD;
        exchanger (J&#xD;
        &lt;subscript&gt;NaCa&lt;/subscript&gt;&#xD;
        ).  This mathematical model has been translated into a CellML description which can be downloaded in various formats as described in&#xD;
        &lt;xref linkend="sec_download_this_model" /&gt;&#xD;
        .&#xD;
      &lt;/para&gt;&#xD;
      &lt;para&gt;The complete original paper reference is cited below:&lt;/para&gt;&#xD;
      &lt;para&gt;&#xD;
        Quantitative Analysis of Mitochondrial Ca&#xD;
        &lt;superscript&gt;2+&lt;/superscript&gt;&#xD;
        Uptake and Release Pathways in Sympathetic Neurons&#xD;
        &lt;emphasis&gt;&#xD;
          Reconstruction of the Recovery after Depolarisation-evoked [Ca&#xD;
          &lt;superscript&gt;2+&lt;/superscript&gt;&#xD;
          ] Elevations&#xD;
        &lt;/emphasis&gt;&#xD;
        , Stephen L. Colegrove, Meredith A. Albrecht and David D. Friel, 2000,&#xD;
        &lt;emphasis&gt;The Journal Of General Physiology&lt;/emphasis&gt;&#xD;
        , 115, 371-388.&#xD;
        &lt;ulink url="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;amp;db=PubMed&amp;amp;list_uids=10694264&amp;amp;dopt=Abstract"&gt;PubMed ID: 10694264&lt;/ulink&gt;&#xD;
      &lt;/para&gt;&#xD;
      &lt;informalfigure float="0" id="fig_cell_diagram"&gt;&#xD;
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            &lt;objectinfo&gt;&#xD;
              &lt;title&gt;cell schematic for the model&lt;/title&gt;&#xD;
            &lt;/objectinfo&gt;&#xD;
            &lt;imagedata fileref="colegrove_2000.png" /&gt;&#xD;
          &lt;/imageobject&gt;&#xD;
        &lt;/mediaobject&gt;&#xD;
        &lt;caption&gt;&#xD;
          Schematic of the model indicating Ca&#xD;
          &lt;superscript&gt;2+&lt;/superscript&gt;&#xD;
          compartmentalization in the extracellular matrix, cytosol and the mitochondrial matrix and pathways for Ca&#xD;
          &lt;superscript&gt;2+&lt;/superscript&gt;&#xD;
          ion movement between the compartments.&#xD;
        &lt;/caption&gt;&#xD;
      &lt;/informalfigure&gt;&#xD;
    &lt;/sect1&gt;&#xD;
  &lt;/article&gt;&#xD;
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