Location: Calcium Dynamics Annotations @ 110f9ba31e34 / keener_2001 / model / keener_2001.rdf

Author:
neilstephen2001 <npar276@aucklanduni.ac.nz>
Date:
2021-01-24 21:37:35+13:00
Desc:
adding OMEX archives to workspace
Permanent Source URI:
http://models.cellml.org/workspace/7f1/rawfile/110f9ba31e34b7499c8d02e13a6b9984351c0e8f/keener_2001/model/keener_2001.rdf

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    <dcterms:description>length of bed of insulin-secreting cells</dcterms:description>
  </rdf:Description>
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    <dcterms:description>diffusivity of insulin</dcterms:description>
  </rdf:Description>
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  </rdf:Description>
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    <dcterms:description>volume fraction of insulin-secreting cells in bed</dcterms:description>
  </rdf:Description>
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     semsim:modelName="keener_2001"
     bqmodel:isDescribedBy="11497161">
    <semsim:hasCellMLdocumentation>&lt;documentation xmlns="http://cellml.org/tmp-documentation"&gt;&#xD;
  &lt;article&gt;&#xD;
    &lt;articleinfo&gt;&#xD;
      &lt;title&gt;Diffusion Induced Oscillatory Insulin Secretion&lt;/title&gt;&#xD;
      &lt;author&gt;&#xD;
        &lt;firstname&gt;Catherine&lt;/firstname&gt;&#xD;
        &lt;surname&gt;Lloyd&lt;/surname&gt;&#xD;
        &lt;affiliation&gt;&#xD;
          &lt;shortaffil&gt;Bioengineering Institute, University of Auckland&lt;/shortaffil&gt;&#xD;
        &lt;/affiliation&gt;&#xD;
      &lt;/author&gt;&#xD;
    &lt;/articleinfo&gt;&#xD;
    &lt;section id="sec_status"&gt;&#xD;
      &lt;title&gt;Model Status&lt;/title&gt;&#xD;
      &lt;para&gt;This model contains partial differentials and as such can not currently be solved by existing CellML tools.&lt;/para&gt;&#xD;
    &lt;/section&gt;&#xD;
    &lt;sect1 id="sec_structure"&gt;&#xD;
      &lt;title&gt;Model Structure&lt;/title&gt;&#xD;
      &lt;para&gt;&#xD;
        Insulin is secreted from pancreatic beta cells in an oscillatory fashion.  In his 2001 paper (cited below), James Keener examines a mathematical model for&#xD;
        &lt;emphasis&gt;in vitro&lt;/emphasis&gt;&#xD;
        insulin secretion from pancreatic beta cells in a one-dimensional chemical flow reactor, where the reaction region is represented by the volume occupied by the cells (see&#xD;
        &lt;xref linkend="fig_cell_diagram" /&gt;&#xD;
        below).  Glucose enters the cell through GLUT-1 and GLUT-2 transporters.  Once inside the cell, intracellular glucose is metabolised, and this process activates insulin secretion via exocytosis of insulin containing granules.  In the extracellular medium, insulin activates GLUT-1 transporters and inactivates GLUT-2 transporters.&#xD;
      &lt;/para&gt;&#xD;
      &lt;para&gt;In order to model the reactions, a steady flow of solution along the one-dimensional reactor is assumed, with insulin cells confined to a one-dimensional region.  Keener found that the oscillations occur as a result of an important interplay between flow rate of the reactor and insulin diffusion.  Without diffusion, the oscillations are eliminated.&lt;/para&gt;&#xD;
      &lt;para&gt;The complete original paper reference is cited below:&lt;/para&gt;&#xD;
      &lt;para&gt;&#xD;
        &lt;ulink url="http://www.sciencedirect.com/science?_ob=ArticleURL&amp;amp;_udi=B6WC7-4593YHR-R&amp;amp;_user=140507&amp;amp;_coverDate=07%2F31%2F2001&amp;amp;_rdoc=2&amp;amp;_fmt=summary&amp;amp;_orig=browse&amp;amp;_srch=%23toc%236731%232001%23999369995%23288659!&amp;amp;_cdi=6731&amp;amp;_sort=d&amp;amp;_docanchor=&amp;amp;wchp=dGLbVzz-lSztb&amp;amp;_acct=C000011498&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=140507&amp;amp;md5=ab655a0002a58212a7c8f4893876257a"&gt;Diffusion Induced Oscillatory Insulin Secretion&lt;/ulink&gt;&#xD;
        , James P. Keener, 2001,&#xD;
        &lt;ulink url="http://www.sciencedirect.com/science?_ob=JournalURL&amp;amp;_cdi=6731&amp;amp;_auth=y&amp;amp;_acct=C000011498&amp;amp;_version=1&amp;amp;_urlVersion=0&amp;amp;_userid=140507&amp;amp;md5=2670d6bf58ba6625cf8c13344d6a4cb5"&gt;&#xD;
          &lt;emphasis&gt;Bulletin of Mathematical Biology&lt;/emphasis&gt;&#xD;
        &lt;/ulink&gt;&#xD;
        , 63, 625-641. (A PDF version of the article is available to subscribers on the Bulletin of Mathematical Biology website.)&#xD;
        &lt;ulink url="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;amp;db=PubMed&amp;amp;list_uids=11497161&amp;amp;dopt=Abstract"&gt;PubMed ID: 11497161&lt;/ulink&gt;&#xD;
      &lt;/para&gt;&#xD;
      &lt;informalfigure float="0" id="fig_cell_diagram"&gt;&#xD;
        &lt;mediaobject&gt;&#xD;
          &lt;imageobject&gt;&#xD;
            &lt;objectinfo&gt;&#xD;
              &lt;title&gt;cell_diagram&lt;/title&gt;&#xD;
            &lt;/objectinfo&gt;&#xD;
            &lt;imagedata fileref="keener_2001.png" /&gt;&#xD;
          &lt;/imageobject&gt;&#xD;
        &lt;/mediaobject&gt;&#xD;
        &lt;caption&gt;A schematic diagram representing the model of glucose uptake, glucose metabolism and insulin secretion by pancreatic beta cells.  Red lines represent the inactivation of GLUT-2 transporters by extracellular insulin, blue arrows represent the activation of GLUT-1 transporters by extracellular insulin and the activation of insulin secretion by glucose metabolism.&lt;/caption&gt;&#xD;
      &lt;/informalfigure&gt;&#xD;
      &lt;para&gt;&#xD;
        The raw CellML descriptions of the model can be downloaded in various formats as described in&#xD;
        &lt;xref linkend="sec_download_this_model" /&gt;&#xD;
        .&#xD;
      &lt;/para&gt;&#xD;
    &lt;/sect1&gt;&#xD;
  &lt;/article&gt;&#xD;
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    <semsim:unknown>Pancreatic Beta Cell</semsim:unknown>
    <semsim:modelName>keener_2001_version01</semsim:modelName>
    <semsim:unknown>James Keener's 2001 mathematical model of insulin secretion oscillations         in pancreatic beta cells.</semsim:unknown>
  </rdf:Description>
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    <bqbiol:isVersionOf rdf:resource="https://identifiers.org/opb/OPB_00593"/>
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  </rdf:Description>
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    <dcterms:description>length of bed of insulin-secreting cells</dcterms:description>
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    <bqbiol:isVersionOf rdf:resource="https://identifiers.org/opb/OPB_00593"/>
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    <dcterms:description>maximum rate of glucose uptake by GLUT-1 receptors</dcterms:description>
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    <dcterms:description>volume fraction of insulin-secreting cells in bed</dcterms:description>
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    <dcterms:description>cooperativity parameter of GLUT-2 transporter</dcterms:description>
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    <bqbiol:isVersionOf rdf:resource="https://identifiers.org/opb/OPB_00593"/>
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    <bqbiol:isPropertyOf rdf:resource="./keener_2001.cellml#entity_0"/>
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    <dcterms:description>concentration of intracellular glucose</dcterms:description>
  </rdf:Description>
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    <dcterms:description>constant flow of solution across reactor</dcterms:description>
  </rdf:Description>
  <rdf:Description rdf:about="./keener_2001.cellml#environment.rho">
    <dcterms:description>volume fraction of insulin-secreting cells in bed</dcterms:description>
  </rdf:Description>
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    <bqbiol:isPropertyOf rdf:resource="./keener_2001.cellml#entity_4"/>
    <bqbiol:isVersionOf rdf:resource="https://identifiers.org/opb/OPB_00340"/>
    <dcterms:description>concentration of insulin</dcterms:description>
  </rdf:Description>
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    <bqbiol:is rdf:resource="https://identifiers.org/opb/OPB_01023"/>
  </rdf:Description>
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    <dcterms:description>diffusivity of glucose</dcterms:description>
  </rdf:Description>
  <rdf:Description rdf:about="./keener_2001.cellml#GLUT_1_transporter.rho">
    <dcterms:description>volume fraction of insulin-secreting cells in bed</dcterms:description>
  </rdf:Description>
</rdf:RDF>