- Author:
- neilstephen2001 <npar276@aucklanduni.ac.nz>
- Date:
- 2021-01-24 22:19:03+13:00
- Desc:
- adding OMEX archives to workspace
- Permanent Source URI:
- http://models.cellml.org/workspace/7f1/rawfile/50021c5a1000bdd09c52c1f1961c7d9377b6ffc6/winograd_destexhe_sanchezvives_2008/model/winograd_destexhe_sanchezvives_2008.rdf
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bqmodel:isDescribedBy="18474856"
semsim:modelName="winograd_destexhe_sanchez_vives_2008">
<semsim:hasCellMLdocumentation><documentation xmlns="http://cellml.org/tmp-documentation">
<article>
<articleinfo>
<title>Hyperpolarization-Activated Graded Persistent Activity in the Prefrontal Cortex</title>
<author>
<firstname>Geoffrey</firstname>
<surname>Nunns</surname>
<affiliation>
<shortaffil>Bioengineering Institute, The University of Auckland</shortaffil>
</affiliation>
</author>
</articleinfo>
<section id="sec_status">
<title>Model Status</title>
<para>This model runs in PCEnv and is based off the NEURON code for this paper. The units are continuous throughout but the model does not recreate the published results. It utilizes DAE solving techniques and advances in these could result in better output.</para>
</section>
<sect1 id="sec_structure">
<title>Model Structure</title>
<para>Abstract: We describe a phenomenon of hyperpolarization-activated graded persistent activity (HAGPA) in prefrontal cortex neurons. Successive hyperpolarizing pulses induced increasingly higher rates of tonic firing that remained stable for tens of seconds, allowing the neuron to retain a memory of the previous history of stimulation. This phenomenon occurred at the cellular level and in the absence of neuromodulators. Neurons with HAGPA had a sag during hyperpolarization, and blocking h-current eliminated the sag and prevented HAGPA, suggesting that the activation of this hyperpolarization-activated cationic current was necessary for the occurrence of the phenomenon. A single-neuron biophysical model including h-current modulation by intracellular calcium was able to display HAGPA. This form of neuronal memory not only allows the transformation of inhibition into an increase of firing rate, but also endows neurons with a mechanism to compute the properties of successive inputs into persistent activity, thus solving a difficult computational problem.</para>
<para>The original paper reference is cited below:</para>
<para>
Hyperpolarization-Activated Graded Persistent Activity in the Prefrontal Cortex, Milena Winograd, Alain Destexhe, Maria V. Sanchez-Vives, 2008,
<emphasis>Proceedings of the National Academy of the Sciences of the United States of America</emphasis>
, 105, 7298-7303.
<ulink url="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&amp;db=PubMed&amp;list_uids=18474856&amp;dopt=Abstract">PubMed ID: 18474856</ulink>
</para>
<informalfigure float="0" id="fig_reaction_diagram">
<mediaobject>
<imageobject>
<objectinfo>
<title>model diagram</title>
</objectinfo>
<imagedata fileref="winograd_2008.png" />
</imageobject>
</mediaobject>
<caption>Schematic diagram of the neuron model.</caption>
</informalfigure>
</sect1>
</article>
</documentation></semsim:hasCellMLdocumentation>
<semsim:modelName>winograd_destexhe_sanchezvives_2008</semsim:modelName>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#membrane.V_T">
<dcterms:description>threshold voltage</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#membrane.I_leak">
<bqbiol:isVersionOf rdf:resource="https://identifiers.org/opb/OPB_00318"/>
<dcterms:description>leakage current</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#G_nonlin.time">
<bqbiol:is rdf:resource="https://identifiers.org/opb/OPB_01023"/>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#I_h.o_1">
<dcterms:description>fraction of hyperpolarisation-activated cationic channels in open O1 state</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#G_nonlin.Ca_i">
<bqbiol:isPropertyOf rdf:resource="./winograd_destexhe_sanchezvives_2008.cellml#entity_2"/>
<bqbiol:isVersionOf rdf:resource="https://identifiers.org/opb/OPB_00340"/>
<dcterms:description>concentration of intracelullar calcium</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#membrane.T">
<dcterms:description>absolute temperature</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#KM_p_gate.V">
<bqbiol:isVersionOf rdf:resource="https://identifiers.org/opb/OPB_00506"/>
<dcterms:description>membrane potential</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#Na_h_gate.V_S">
<dcterms:description>spike voltage</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#I_CaL.I_CaL">
<bqbiol:isVersionOf rdf:resource="https://identifiers.org/opb/OPB_00318"/>
<dcterms:description>L-type calcium current</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#rate_constants.Ca_c">
<bqbiol:isPropertyOf rdf:resource="./winograd_destexhe_sanchezvives_2008.cellml#entity_2"/>
<bqbiol:isVersionOf rdf:resource="https://identifiers.org/opb/OPB_00340"/>
<dcterms:description>calcium half-activation constant</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#rate_constants.beta">
<bqbiol:is rdf:resource="https://identifiers.org/opb/OPB_01296"/>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#I_h.E_h">
<dcterms:description>hyperpolarisation-activated cationic current reversal potential</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#I_Na.E_Na">
<dcterms:description>sodium reversal potential</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#I_Na.g_Na">
<dcterms:description>sodium current conductance</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#Na_h_gate.V">
<bqbiol:isVersionOf rdf:resource="https://identifiers.org/opb/OPB_00506"/>
<dcterms:description>membrane potential</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#G_nonlin.G">
<dcterms:description>function of voltage and ionic concentrations</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#I_KD.g_KD">
<dcterms:description>delayed rectifier potassium current conductance</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#kinetic.o_2">
<dcterms:description>fraction of hyperpolarisation-activated cationic channels in open O2 state</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#dCa_i_dt.R">
<bqbiol:is rdf:resource="https://identifiers.org/opb/OPB_00410"/>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#CaL_q_gate.V">
<bqbiol:isVersionOf rdf:resource="https://identifiers.org/opb/OPB_00506"/>
<dcterms:description>membrane potential</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#I_leak.E_leak">
<dcterms:description>leakage reversal potential</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#G_nonlin.V">
<bqbiol:isVersionOf rdf:resource="https://identifiers.org/opb/OPB_00506"/>
<dcterms:description>membrane potential</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#I_Na.h">
<dcterms:description>sodium current inactivation variable</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#dCa_i_dt.k">
<dcterms:description>proportionality constant</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#membrane.I_h">
<bqbiol:isVersionOf rdf:resource="https://identifiers.org/opb/OPB_00318"/>
<dcterms:description>hyperpolarisation-activated cationic current</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#CaL_q_gate.time">
<bqbiol:is rdf:resource="https://identifiers.org/opb/OPB_01023"/>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#stimulus_protocol.time">
<bqbiol:is rdf:resource="https://identifiers.org/opb/OPB_01023"/>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#I_h.V">
<bqbiol:isVersionOf rdf:resource="https://identifiers.org/opb/OPB_00506"/>
<dcterms:description>membrane potential</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#Na_m_gate.m">
<dcterms:description>sodium current activation variable</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#rate_constants.k_3p">
<bqbiol:is rdf:resource="https://identifiers.org/opb/OPB_01296"/>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#dCa_i_dt.I_CaL">
<bqbiol:isVersionOf rdf:resource="https://identifiers.org/opb/OPB_00318"/>
<dcterms:description>L-type calcium current</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#G_nonlin.F">
<bqbiol:is rdf:resource="https://identifiers.org/opb/OPB_00089"/>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#membrane.I_CaL">
<bqbiol:isVersionOf rdf:resource="https://identifiers.org/opb/OPB_00318"/>
<dcterms:description>L-type calcium current</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#dCa_i_dt.time">
<bqbiol:is rdf:resource="https://identifiers.org/opb/OPB_01023"/>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#stimulus_protocol.tau">
<dcterms:description>time constant of externally applied stimulus current</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#I_KD.time">
<bqbiol:is rdf:resource="https://identifiers.org/opb/OPB_01023"/>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#kinetic.o_1">
<dcterms:description>fraction of hyperpolarisation-activated cationic channels in open O1 state</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#I_KM.E_K">
<dcterms:description>leakage reversal potential</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#KD_n_gate.n_inf">
<dcterms:description>steady state function of delayed rectifier potassium current activation variable</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#rate_constants.V">
<bqbiol:isVersionOf rdf:resource="https://identifiers.org/opb/OPB_00506"/>
<dcterms:description>membrane potential</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#membrane.R">
<bqbiol:is rdf:resource="https://identifiers.org/opb/OPB_00410"/>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#KD_n_gate.time">
<bqbiol:is rdf:resource="https://identifiers.org/opb/OPB_01023"/>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#I_KD.E_K">
<dcterms:description>leakage reversal potential</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#I_KM.I_KM">
<bqbiol:isVersionOf rdf:resource="https://identifiers.org/opb/OPB_00318"/>
<dcterms:description>slow potassium current</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#I_Na.I_Na">
<bqbiol:isVersionOf rdf:resource="https://identifiers.org/opb/OPB_00318"/>
<dcterms:description>sodium current</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#kinetic.alpha">
<bqbiol:is rdf:resource="https://identifiers.org/opb/OPB_01296"/>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#Na_h_gate.tau_h">
<dcterms:description>time constant of sodium current inactivation gate</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#KD_n_gate.beta_n">
<bqbiol:is rdf:resource="https://identifiers.org/opb/OPB_01296"/>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#Na_h_gate.beta_h">
<bqbiol:is rdf:resource="https://identifiers.org/opb/OPB_01296"/>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#membrane.time">
<bqbiol:is rdf:resource="https://identifiers.org/opb/OPB_01023"/>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#Na_h_gate.h">
<dcterms:description>sodium current inactivation variable</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#G_nonlin.Ca_o">
<bqbiol:isPropertyOf>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#entity_0">
<bqbiol:isPartOf>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#entity_1">
<bqbiol:is rdf:resource="http://identifiers.org/fma/FMA:70022"/>
</rdf:Description>
</bqbiol:isPartOf>
<bqbiol:is rdf:resource="https://identifiers.org/chebi/CHEBI:29108"/>
</rdf:Description>
</bqbiol:isPropertyOf>
<bqbiol:isVersionOf rdf:resource="https://identifiers.org/opb/OPB_00340"/>
<dcterms:description>concentration of extracelullar calcium</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#dCa_i_dt.d">
<dcterms:description>shell depth beneath membrane</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#I_leak.g_leak">
<dcterms:description>leakage current conductance</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#I_KD.n">
<dcterms:description>delayed rectifier potassium current activation variable</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#I_h.V_S">
<dcterms:description>spike voltage</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#I_leak.V">
<bqbiol:isVersionOf rdf:resource="https://identifiers.org/opb/OPB_00506"/>
<dcterms:description>membrane potential</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#dCa_i_dt.Ca_inf">
<bqbiol:isPropertyOf rdf:resource="./winograd_destexhe_sanchezvives_2008.cellml#entity_2"/>
<bqbiol:isVersionOf rdf:resource="https://identifiers.org/opb/OPB_00340"/>
<dcterms:description>equilibrium concentration of intracellular calcium</dcterms:description>
</rdf:Description>
<rdf:Description rdf:about="./winograd_destexhe_sanchezvives_2008.cellml#Na_m_gate.alpha">
<bqbiol:is rdf:resource="https://identifiers.org/opb/OPB_01296"/>
</rdf:Description>
</rdf:RDF>