- Author:
- Shelley Fong <sfon036@UoA.auckland.ac.nz>
- Date:
- 2022-05-30 13:54:16+12:00
- Desc:
- Removing pH dependence
- Permanent Source URI:
- http://models.cellml.org/workspace/883/rawfile/46f552962fb3f4e1bb7690adf11a6a923a78635d/parameter_finder/output/TEMP.cellml.txt
def model individual_pH_B1 as
def import using "units_and_constants/units_BG.cellml" for
unit mM using unit mM;
unit fmol using unit fmol;
unit per_fmol using unit per_fmol;
unit J_per_mol using unit J_per_mol;
unit fmol_per_sec using unit fmol_per_sec;
unit C_per_mol using unit C_per_mol;
unit J_per_C using unit J_per_C;
unit microm3 using unit microm3;
unit fF using unit fF;
unit fC using unit fC;
unit fA using unit fA;
unit per_second using unit per_second;
unit millivolt using unit millivolt;
unit per_sec using unit per_sec;
unit J_per_K_per_mol using unit J_per_K_per_mol;
unit fmol_per_L using unit fmol_per_L;
unit fmol_per_L_per_sec using unit fmol_per_L_per_sec;
unit per_sec_per_fmol_per_L using unit per_sec_per_fmol_per_L;
unit uM using unit uM;
unit mM_per_sec using unit mM_per_sec;
unit uM_per_sec using unit uM_per_sec;
unit pL using unit pL;
unit m_to_u using unit m_to_u;
enddef;
def import using "units_and_constants/constants_BG.cellml" for
comp constants using comp constants;
enddef;
def comp environment as
var time: second {pub: out};
// initial values
var q_H_i: fmol {init: 1e-888, pub: out};
var q_B1: fmol {init: 1e-888, pub: out};
var q_HB1: fmol {init: 1e-888, pub: out};
// From submodule
var v_Re_B1: fmol_per_sec {pub: in};
ode(q_H_i, time) = vvv;
ode(q_B1, time) = vvv;
ode(q_HB1, time) = vvv;
enddef;
def comp pH_B1_parameters as
var kappa_Re_B1: fmol_per_sec {init: 0.436516, pub: out};
var K_H_i: per_fmol {init: 0.67642, pub: out};
var K_B1: per_fmol {init: 3.5499, pub: out};
var K_HB1: per_fmol {init: 8.51562e-05, pub: out};
enddef;
def comp pH_B1 as
var time: second {pub: in};
var R: J_per_K_per_mol {pub: in};
var T: kelvin {pub: in};
// parameters
var kappa_Re_B1: fmol_per_sec {pub: in};
var K_H_i: per_fmol {pub: in};
var K_B1: per_fmol {pub: in};
var K_HB1: per_fmol {pub: in};
// Input from global environment
var q_H_i: fmol {pub: in};
var q_B1: fmol {pub: in};
var q_HB1: fmol {pub: in};
// Constitutive parameters
var mu_H_i: J_per_mol;
var mu_B1: J_per_mol;
var mu_HB1: J_per_mol;
var v_Re_B1: fmol_per_sec {pub: out};
mu_H_i = R*T*ln(K_H_i*q_H_i);
mu_B1 = R*T*ln(K_B1*q_B1);
mu_HB1 = R*T*ln(K_HB1*q_HB1);
v_Re_B1 = ppp;
enddef;
def map between environment and pH_B1 for
vars time and time;
vars q_H_i and q_H_i;
vars q_B1 and q_B1;
vars q_HB1 and q_HB1;
vars v_Re_B1 and v_Re_B1;
enddef;
def map between pH_B1 and pH_B1_parameters for
vars kappa_Re_B1 and kappa_Re_B1;
vars K_H_i and K_H_i;
vars K_B1 and K_B1;
vars K_HB1 and K_HB1;
enddef;
def map between constants and pH_B1 for
vars R and R;
vars T and T;
enddef;
enddef;