- Author:
- Shelley Fong <sfon036@UoA.auckland.ac.nz>
- Date:
- 2022-05-27 15:37:29+12:00
- Desc:
- Updating with separated pH dependent reactions of transporters
- Permanent Source URI:
- http://models.cellml.org/workspace/885/rawfile/e5723b97f9a9d11e6f29840cc30f23eaeb1e9f1d/FCU_cardiac_pH.m
tic;
[VOI, STATES, ALGEBRAIC, CONSTANTS] = mainFunction();
toc;
function [VOI, STATES, ALGEBRAIC, CONSTANTS] = mainFunction()
% This is the "main function". In Matlab, things work best if you rename this function to match the filename.
[VOI, STATES, ALGEBRAIC, CONSTANTS] = solveModel();
end
function [algebraicVariableCount] = getAlgebraicVariableCount()
% Used later when setting a global variable with the number of algebraic variables.
% Note: This is not the "main method".
algebraicVariableCount =119;
end
% There are a total of 39 entries in each of the rate and state variable arrays.
% There are a total of 106 entries in the constant variable array.
%
function [VOI, STATES, ALGEBRAIC, CONSTANTS] = solveModel()
[LEGEND_STATES, LEGEND_ALGEBRAIC, LEGEND_VOI, LEGEND_CONSTANTS] = createLegends();
% Create ALGEBRAIC of correct size
global algebraicVariableCount; algebraicVariableCount = getAlgebraicVariableCount();
% Initialise constants and state variables
[INIT_STATES, CONSTANTS] = initConsts;
% Set timespan to solve over
tspan = [0, 5];
% Set numerical accuracy options for ODE solver
options = odeset('RelTol', 1e-06, 'AbsTol', 1e-06, 'MaxStep', 1e-5);
% Solve model with ODE solver
[VOI, STATES] = ode15s(@(VOI, STATES)computeRates(VOI, STATES, CONSTANTS), tspan, INIT_STATES, options);
% Compute algebraic variables
[RATES, ALGEBRAIC] = computeRates(VOI, STATES, CONSTANTS);
ALGEBRAIC = computeAlgebraic(ALGEBRAIC, CONSTANTS, STATES, VOI);
vlabels = {'pH_i in component environment (dimensionless)',...
'pH_o in component environment (dimensionless)',...
'q_Cl_i in component environment (fmol)',...
'q_Na_i in component environment (fmol)',...
'q_HCO3_i in component environment (fmol)',...
'q_HB1 in component environment (fmol)' };
[~, i_st, i_alg] = find_indices(vlabels, cellstr(LEGEND_CONSTANTS), cellstr(LEGEND_STATES), cellstr(LEGEND_ALGEBRAIC));
if i_st
vol_myo = 38; % pL
plot_selected(i_st,VOI,STATES/vol_myo,'s',LEGEND_STATES,'concentrations mM',ceil(sqrt(length(i_st))))
end
plot_selected(i_alg,VOI,ALGEBRAIC,'s',LEGEND_ALGEBRAIC,'ALGEBRAIC',ceil(sqrt(length(i_alg))))
% fluxes
vlabels = {
'v_R12_AE in component AE (fmol_per_sec)',...
'v_R45_AE in component AE (fmol_per_sec)',...
'v_R12_CHE in component CHE (fmol_per_sec)',...
'v_R45_CHE in component CHE (fmol_per_sec)',...
'v_Re_CO2hyd in component CO2_hyd (fmol_per_sec)',...
'v_R12_NBC in component NBC (fmol_per_sec)',...
'v_R45_NBC in component NBC (fmol_per_sec)',...
'v_R12_NHE in component NHE (fmol_per_sec)',...
'v_R45_NHE in component NHE (fmol_per_sec)',...
'v_Re_B1 in component pH_B1 (fmol_per_sec)',...
'v_Re_B2 in component pH_B2 (fmol_per_sec)' };
[~, ~, i_alg] = find_indices(vlabels, cellstr(LEGEND_CONSTANTS), cellstr(LEGEND_STATES), cellstr(LEGEND_ALGEBRAIC));
if true
plot_selected(i_alg,VOI,ALGEBRAIC,'s',LEGEND_ALGEBRAIC,'FLUXES',ceil(sqrt(length(i_alg))))
end
end
function [i_con, i_st, i_alg] = find_indices(labels, LEGEND_CONSTANTS, LEGEND_STATES, LEGEND_ALGEBRAIC)
% return the indices for the selected labels
all_legends = [LEGEND_CONSTANTS; LEGEND_STATES; LEGEND_ALGEBRAIC];
i_con = [];
for i = 1:length(labels)
i_con = [i_con; find(strcmp(labels{i},LEGEND_CONSTANTS))];
end
i_st = [];
for i = 1:length(labels)
i_st = [i_st; find(strcmp(labels{i},LEGEND_STATES))];
end
i_alg = [];
for i = 1:length(labels)
i_alg = [i_alg; find(strcmp(labels{i},LEGEND_ALGEBRAIC))];
end
if length(i_con) + length(i_st) + length(i_alg) < length(labels)
error('missing index');
end
end
function [] = plot_selected(ids,x,y,legend_x,legend_y,titlestr,ns)
istart = 1;
% istart = find(x > 3.2, 1);
figure();
% plot stimuli
for i = 1:length(ids)
subplot(ns,ns,i)
plotting_x = x(istart:end);
plotting_y = y(istart:end,ids(i));
if isempty(plotting_y) % probably a constant scalar
plotting_y = repmat(y(ids(i)),2);
plotting_x = [x(istart), x(end)];
end
plot(plotting_x, plotting_y);
xlabel('time (s)');
str = split(legend_y(ids(i),:), ' ');
str = legend_y(ids(i),:);
l = legend(str);
set(l,'interpreter','none');
end
if verLessThan('matlab','9.5')
suptitle(titlestr)
else
sgtitle(titlestr)
end
end
function [LEGEND_STATES, LEGEND_ALGEBRAIC, LEGEND_VOI, LEGEND_CONSTANTS] = createLegends()
LEGEND_STATES = ''; LEGEND_ALGEBRAIC = ''; LEGEND_VOI = ''; LEGEND_CONSTANTS = '';
LEGEND_CONSTANTS(:,1) = strpad('kappa_R61_AE in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,2) = strpad('kappa_R12_AE in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,3) = strpad('kappa_R23_AE in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,4) = strpad('kappa_R34_AE in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,5) = strpad('kappa_R45_AE in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,6) = strpad('kappa_R56_AE in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,7) = strpad('kappa_R61_pHi_AE in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,8) = strpad('kappa_R12_pHi_AE in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,9) = strpad('kappa_R23_pHi_AE in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,10) = strpad('kappa_R34_pHi_AE in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,11) = strpad('kappa_R45_pHi_AE in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,12) = strpad('kappa_R56_pHi_AE in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,13) = strpad('kappa_R61_pHo_AE in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,14) = strpad('kappa_R12_pHo_AE in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,15) = strpad('kappa_R23_pHo_AE in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,16) = strpad('kappa_R34_pHo_AE in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,17) = strpad('kappa_R45_pHo_AE in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,18) = strpad('kappa_R56_pHo_AE in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,19) = strpad('kappa_R61_CHE in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,20) = strpad('kappa_R12_CHE in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,21) = strpad('kappa_R23_CHE in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,22) = strpad('kappa_R34_CHE in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,23) = strpad('kappa_R45_CHE in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,24) = strpad('kappa_R56_CHE in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,25) = strpad('kappa_Re_CO2hyd in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,26) = strpad('kappa_R61_NBC in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,27) = strpad('kappa_R12_NBC in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,28) = strpad('kappa_R23_NBC in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,29) = strpad('kappa_R34_NBC in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,30) = strpad('kappa_R45_NBC in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,31) = strpad('kappa_R56_NBC in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,32) = strpad('kappa_R61_pHi_NBC in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,33) = strpad('kappa_R12_pHi_NBC in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,34) = strpad('kappa_R23_pHi_NBC in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,35) = strpad('kappa_R34_pHi_NBC in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,36) = strpad('kappa_R45_pHi_NBC in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,37) = strpad('kappa_R56_pHi_NBC in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,38) = strpad('kappa_R61_pHo_NBC in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,39) = strpad('kappa_R12_pHo_NBC in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,40) = strpad('kappa_R23_pHo_NBC in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,41) = strpad('kappa_R34_pHo_NBC in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,42) = strpad('kappa_R45_pHo_NBC in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,43) = strpad('kappa_R56_pHo_NBC in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,44) = strpad('kappa_R61_NHE in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,45) = strpad('kappa_R12_NHE in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,46) = strpad('kappa_R23_NHE in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,47) = strpad('kappa_R34_NHE in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,48) = strpad('kappa_R45_NHE in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,49) = strpad('kappa_R56_NHE in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,50) = strpad('kappa_R61_pHi_NHE in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,51) = strpad('kappa_R12_pHi_NHE in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,52) = strpad('kappa_R23_pHi_NHE in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,53) = strpad('kappa_R34_pHi_NHE in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,54) = strpad('kappa_R45_pHi_NHE in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,55) = strpad('kappa_R56_pHi_NHE in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,56) = strpad('kappa_Re_B1 in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,57) = strpad('kappa_Re_B2 in component BG_parameters (fmol_per_sec)');
LEGEND_CONSTANTS(:,58) = strpad('K_HCO3_i in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,59) = strpad('K_HCO3_o in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,60) = strpad('K_Cl_i in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,61) = strpad('K_Cl_o in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,62) = strpad('K_S1_AE in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,63) = strpad('K_S2_AE in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,64) = strpad('K_S3_AE in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,65) = strpad('K_S4_AE in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,66) = strpad('K_S5_AE in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,67) = strpad('K_S6_AE in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,68) = strpad('K_H_i in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,69) = strpad('K_H_o in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,70) = strpad('K_OH_i in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,71) = strpad('K_OH_o in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,72) = strpad('K_S1_CHE in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,73) = strpad('K_S2_CHE in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,74) = strpad('K_S3_CHE in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,75) = strpad('K_S4_CHE in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,76) = strpad('K_S5_CHE in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,77) = strpad('K_S6_CHE in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,78) = strpad('K_CO2_i in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,79) = strpad('K_Na_i in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,80) = strpad('K_Na_o in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,81) = strpad('K_S1_NBC in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,82) = strpad('K_S2_NBC in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,83) = strpad('K_S3_NBC in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,84) = strpad('K_S4_NBC in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,85) = strpad('K_S5_NBC in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,86) = strpad('K_S6_NBC in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,87) = strpad('K_S1_NHE in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,88) = strpad('K_S2_NHE in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,89) = strpad('K_S3_NHE in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,90) = strpad('K_S4_NHE in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,91) = strpad('K_S5_NHE in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,92) = strpad('K_S6_NHE in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,93) = strpad('K_B1 in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,94) = strpad('K_HB1 in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,95) = strpad('K_B2 in component BG_parameters (per_fmol)');
LEGEND_CONSTANTS(:,96) = strpad('K_HB2 in component BG_parameters (per_fmol)');
LEGEND_VOI = strpad('time in component environment (second)');
LEGEND_STATES(:,1) = strpad('q_HCO3_i in component environment (fmol)');
LEGEND_STATES(:,2) = strpad('q_HCO3_o in component environment (fmol)');
LEGEND_STATES(:,3) = strpad('q_Cl_i in component environment (fmol)');
LEGEND_STATES(:,4) = strpad('q_Cl_o in component environment (fmol)');
LEGEND_STATES(:,5) = strpad('q_OH_i in component environment (fmol)');
LEGEND_STATES(:,6) = strpad('q_OH_o in component environment (fmol)');
LEGEND_STATES(:,7) = strpad('q_Na_i in component environment (fmol)');
LEGEND_STATES(:,8) = strpad('q_Na_o in component environment (fmol)');
LEGEND_STATES(:,9) = strpad('q_H_i in component environment (fmol)');
LEGEND_STATES(:,10) = strpad('q_H_o in component environment (fmol)');
LEGEND_STATES(:,11) = strpad('q_B1 in component environment (fmol)');
LEGEND_STATES(:,12) = strpad('q_HB1 in component environment (fmol)');
LEGEND_STATES(:,13) = strpad('q_B2 in component environment (fmol)');
LEGEND_STATES(:,14) = strpad('q_HB2 in component environment (fmol)');
LEGEND_STATES(:,15) = strpad('q_CO2_i in component environment (fmol)');
LEGEND_ALGEBRAIC(:,17) = strpad('v_R61_AE in component AE (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,18) = strpad('v_R12_AE in component AE (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,19) = strpad('v_R23_AE in component AE (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,20) = strpad('v_R34_AE in component AE (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,21) = strpad('v_R45_AE in component AE (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,22) = strpad('v_R56_AE in component AE (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,24) = strpad('v_R61_pHi_AE in component AE (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,26) = strpad('v_R12_pHi_AE in component AE (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,28) = strpad('v_R23_pHi_AE in component AE (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,30) = strpad('v_R34_pHi_AE in component AE (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,33) = strpad('v_R45_pHi_AE in component AE (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,35) = strpad('v_R56_pHi_AE in component AE (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,39) = strpad('v_R61_pHo_AE in component AE (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,41) = strpad('v_R12_pHo_AE in component AE (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,43) = strpad('v_R23_pHo_AE in component AE (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,45) = strpad('v_R34_pHo_AE in component AE (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,47) = strpad('v_R45_pHo_AE in component AE (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,49) = strpad('v_R56_pHo_AE in component AE (fmol_per_sec)');
LEGEND_CONSTANTS(:,97) = strpad('ni in component AE (dimensionless)');
LEGEND_CONSTANTS(:,98) = strpad('no in component AE (dimensionless)');
LEGEND_ALGEBRAIC(:,42) = strpad('v_R61_CHE in component CHE (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,44) = strpad('v_R12_CHE in component CHE (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,46) = strpad('v_R23_CHE in component CHE (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,48) = strpad('v_R34_CHE in component CHE (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,50) = strpad('v_R45_CHE in component CHE (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,52) = strpad('v_R56_CHE in component CHE (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,56) = strpad('v_Re_CO2hyd in component CO2_hyd (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,69) = strpad('v_R61_NBC in component NBC (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,70) = strpad('v_R12_NBC in component NBC (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,71) = strpad('v_R23_NBC in component NBC (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,72) = strpad('v_R34_NBC in component NBC (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,73) = strpad('v_R45_NBC in component NBC (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,74) = strpad('v_R56_NBC in component NBC (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,75) = strpad('v_R61_pHi_NBC in component NBC (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,76) = strpad('v_R12_pHi_NBC in component NBC (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,77) = strpad('v_R23_pHi_NBC in component NBC (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,78) = strpad('v_R34_pHi_NBC in component NBC (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,79) = strpad('v_R45_pHi_NBC in component NBC (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,80) = strpad('v_R56_pHi_NBC in component NBC (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,82) = strpad('v_R61_pHo_NBC in component NBC (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,83) = strpad('v_R12_pHo_NBC in component NBC (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,84) = strpad('v_R23_pHo_NBC in component NBC (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,85) = strpad('v_R34_pHo_NBC in component NBC (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,86) = strpad('v_R45_pHo_NBC in component NBC (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,87) = strpad('v_R56_pHo_NBC in component NBC (fmol_per_sec)');
LEGEND_CONSTANTS(:,99) = strpad('ni in component NBC (dimensionless)');
LEGEND_CONSTANTS(:,100) = strpad('no in component NBC (dimensionless)');
LEGEND_ALGEBRAIC(:,99) = strpad('v_R61_NHE in component NHE (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,100) = strpad('v_R12_NHE in component NHE (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,101) = strpad('v_R23_NHE in component NHE (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,102) = strpad('v_R34_NHE in component NHE (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,103) = strpad('v_R45_NHE in component NHE (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,104) = strpad('v_R56_NHE in component NHE (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,105) = strpad('v_R61_pHi_NHE in component NHE (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,106) = strpad('v_R12_pHi_NHE in component NHE (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,107) = strpad('v_R23_pHi_NHE in component NHE (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,108) = strpad('v_R34_pHi_NHE in component NHE (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,109) = strpad('v_R45_pHi_NHE in component NHE (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,110) = strpad('v_R56_pHi_NHE in component NHE (fmol_per_sec)');
LEGEND_CONSTANTS(:,101) = strpad('ni in component NHE (dimensionless)');
LEGEND_ALGEBRAIC(:,115) = strpad('v_Re_B1 in component pH_B1 (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,119) = strpad('v_Re_B2 in component pH_B2 (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,81) = strpad('dH_idt_NBC in component environment (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,111) = strpad('dH_idt_NHE in component environment (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,37) = strpad('dH_idt_AE in component environment (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,88) = strpad('dH_odt_NBC in component environment (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,51) = strpad('dH_odt_AE in component environment (fmol_per_sec)');
LEGEND_ALGEBRAIC(:,4) = strpad('pH_i in component environment (dimensionless)');
LEGEND_ALGEBRAIC(:,5) = strpad('pH_o in component environment (dimensionless)');
LEGEND_ALGEBRAIC(:,1) = strpad('cH_i in component environment (mM)');
LEGEND_ALGEBRAIC(:,2) = strpad('cH_o in component environment (mM)');
LEGEND_CONSTANTS(:,102) = strpad('w_i in component environment (pL)');
LEGEND_CONSTANTS(:,103) = strpad('w_o in component environment (pL)');
LEGEND_CONSTANTS(:,104) = strpad('R in component constants (J_per_K_per_mol)');
LEGEND_CONSTANTS(:,105) = strpad('T in component constants (kelvin)');
LEGEND_CONSTANTS(:,106) = strpad('F in component constants (C_per_mol)');
LEGEND_STATES(:,16) = strpad('q_S1_AE in component AE (fmol)');
LEGEND_STATES(:,17) = strpad('q_S2_AE in component AE (fmol)');
LEGEND_STATES(:,18) = strpad('q_S3_AE in component AE (fmol)');
LEGEND_STATES(:,19) = strpad('q_S4_AE in component AE (fmol)');
LEGEND_STATES(:,20) = strpad('q_S5_AE in component AE (fmol)');
LEGEND_STATES(:,21) = strpad('q_S6_AE in component AE (fmol)');
LEGEND_ALGEBRAIC(:,3) = strpad('mu_HCO3_i in component AE (J_per_mol)');
LEGEND_ALGEBRAIC(:,6) = strpad('mu_HCO3_o in component AE (J_per_mol)');
LEGEND_ALGEBRAIC(:,7) = strpad('mu_Cl_i in component AE (J_per_mol)');
LEGEND_ALGEBRAIC(:,8) = strpad('mu_Cl_o in component AE (J_per_mol)');
LEGEND_ALGEBRAIC(:,9) = strpad('mu_S1_AE in component AE (J_per_mol)');
LEGEND_ALGEBRAIC(:,10) = strpad('mu_S2_AE in component AE (J_per_mol)');
LEGEND_ALGEBRAIC(:,11) = strpad('mu_S3_AE in component AE (J_per_mol)');
LEGEND_ALGEBRAIC(:,12) = strpad('mu_S4_AE in component AE (J_per_mol)');
LEGEND_ALGEBRAIC(:,13) = strpad('mu_S5_AE in component AE (J_per_mol)');
LEGEND_ALGEBRAIC(:,14) = strpad('mu_S6_AE in component AE (J_per_mol)');
LEGEND_ALGEBRAIC(:,15) = strpad('mu_H_i in component AE (J_per_mol)');
LEGEND_ALGEBRAIC(:,16) = strpad('mu_H_o in component AE (J_per_mol)');
LEGEND_STATES(:,22) = strpad('q_S1_CHE in component CHE (fmol)');
LEGEND_STATES(:,23) = strpad('q_S2_CHE in component CHE (fmol)');
LEGEND_STATES(:,24) = strpad('q_S3_CHE in component CHE (fmol)');
LEGEND_STATES(:,25) = strpad('q_S4_CHE in component CHE (fmol)');
LEGEND_STATES(:,26) = strpad('q_S5_CHE in component CHE (fmol)');
LEGEND_STATES(:,27) = strpad('q_S6_CHE in component CHE (fmol)');
LEGEND_ALGEBRAIC(:,23) = strpad('mu_OH_i in component CHE (J_per_mol)');
LEGEND_ALGEBRAIC(:,25) = strpad('mu_OH_o in component CHE (J_per_mol)');
LEGEND_ALGEBRAIC(:,27) = strpad('mu_Cl_i in component CHE (J_per_mol)');
LEGEND_ALGEBRAIC(:,29) = strpad('mu_Cl_o in component CHE (J_per_mol)');
LEGEND_ALGEBRAIC(:,31) = strpad('mu_S1_CHE in component CHE (J_per_mol)');
LEGEND_ALGEBRAIC(:,32) = strpad('mu_S2_CHE in component CHE (J_per_mol)');
LEGEND_ALGEBRAIC(:,34) = strpad('mu_S3_CHE in component CHE (J_per_mol)');
LEGEND_ALGEBRAIC(:,36) = strpad('mu_S4_CHE in component CHE (J_per_mol)');
LEGEND_ALGEBRAIC(:,38) = strpad('mu_S5_CHE in component CHE (J_per_mol)');
LEGEND_ALGEBRAIC(:,40) = strpad('mu_S6_CHE in component CHE (J_per_mol)');
LEGEND_ALGEBRAIC(:,53) = strpad('mu_CO2_i in component CO2_hyd (J_per_mol)');
LEGEND_ALGEBRAIC(:,54) = strpad('mu_HCO3_i in component CO2_hyd (J_per_mol)');
LEGEND_ALGEBRAIC(:,55) = strpad('mu_H_i in component CO2_hyd (J_per_mol)');
LEGEND_STATES(:,28) = strpad('q_S1_NBC in component NBC (fmol)');
LEGEND_STATES(:,29) = strpad('q_S2_NBC in component NBC (fmol)');
LEGEND_STATES(:,30) = strpad('q_S3_NBC in component NBC (fmol)');
LEGEND_STATES(:,31) = strpad('q_S4_NBC in component NBC (fmol)');
LEGEND_STATES(:,32) = strpad('q_S5_NBC in component NBC (fmol)');
LEGEND_STATES(:,33) = strpad('q_S6_NBC in component NBC (fmol)');
LEGEND_ALGEBRAIC(:,57) = strpad('mu_Na_i in component NBC (J_per_mol)');
LEGEND_ALGEBRAIC(:,58) = strpad('mu_Na_o in component NBC (J_per_mol)');
LEGEND_ALGEBRAIC(:,59) = strpad('mu_HCO3_i in component NBC (J_per_mol)');
LEGEND_ALGEBRAIC(:,60) = strpad('mu_HCO3_o in component NBC (J_per_mol)');
LEGEND_ALGEBRAIC(:,61) = strpad('mu_S1_NBC in component NBC (J_per_mol)');
LEGEND_ALGEBRAIC(:,62) = strpad('mu_S2_NBC in component NBC (J_per_mol)');
LEGEND_ALGEBRAIC(:,63) = strpad('mu_S3_NBC in component NBC (J_per_mol)');
LEGEND_ALGEBRAIC(:,64) = strpad('mu_S4_NBC in component NBC (J_per_mol)');
LEGEND_ALGEBRAIC(:,65) = strpad('mu_S5_NBC in component NBC (J_per_mol)');
LEGEND_ALGEBRAIC(:,66) = strpad('mu_S6_NBC in component NBC (J_per_mol)');
LEGEND_ALGEBRAIC(:,67) = strpad('mu_H_i in component NBC (J_per_mol)');
LEGEND_ALGEBRAIC(:,68) = strpad('mu_H_o in component NBC (J_per_mol)');
LEGEND_STATES(:,34) = strpad('q_S1_NHE in component NHE (fmol)');
LEGEND_STATES(:,35) = strpad('q_S2_NHE in component NHE (fmol)');
LEGEND_STATES(:,36) = strpad('q_S3_NHE in component NHE (fmol)');
LEGEND_STATES(:,37) = strpad('q_S4_NHE in component NHE (fmol)');
LEGEND_STATES(:,38) = strpad('q_S5_NHE in component NHE (fmol)');
LEGEND_STATES(:,39) = strpad('q_S6_NHE in component NHE (fmol)');
LEGEND_ALGEBRAIC(:,89) = strpad('mu_H_i in component NHE (J_per_mol)');
LEGEND_ALGEBRAIC(:,90) = strpad('mu_H_o in component NHE (J_per_mol)');
LEGEND_ALGEBRAIC(:,91) = strpad('mu_Na_i in component NHE (J_per_mol)');
LEGEND_ALGEBRAIC(:,92) = strpad('mu_Na_o in component NHE (J_per_mol)');
LEGEND_ALGEBRAIC(:,93) = strpad('mu_S1_NHE in component NHE (J_per_mol)');
LEGEND_ALGEBRAIC(:,94) = strpad('mu_S2_NHE in component NHE (J_per_mol)');
LEGEND_ALGEBRAIC(:,95) = strpad('mu_S3_NHE in component NHE (J_per_mol)');
LEGEND_ALGEBRAIC(:,96) = strpad('mu_S4_NHE in component NHE (J_per_mol)');
LEGEND_ALGEBRAIC(:,97) = strpad('mu_S5_NHE in component NHE (J_per_mol)');
LEGEND_ALGEBRAIC(:,98) = strpad('mu_S6_NHE in component NHE (J_per_mol)');
LEGEND_ALGEBRAIC(:,112) = strpad('mu_H_i in component pH_B1 (J_per_mol)');
LEGEND_ALGEBRAIC(:,113) = strpad('mu_B1 in component pH_B1 (J_per_mol)');
LEGEND_ALGEBRAIC(:,114) = strpad('mu_HB1 in component pH_B1 (J_per_mol)');
LEGEND_ALGEBRAIC(:,116) = strpad('mu_H_i in component pH_B2 (J_per_mol)');
LEGEND_ALGEBRAIC(:,117) = strpad('mu_B2 in component pH_B2 (J_per_mol)');
LEGEND_ALGEBRAIC(:,118) = strpad('mu_HB2 in component pH_B2 (J_per_mol)');
LEGEND_RATES(:,1) = strpad('d/dt q_HCO3_i in component environment (fmol)');
LEGEND_RATES(:,2) = strpad('d/dt q_HCO3_o in component environment (fmol)');
LEGEND_RATES(:,3) = strpad('d/dt q_Cl_i in component environment (fmol)');
LEGEND_RATES(:,4) = strpad('d/dt q_Cl_o in component environment (fmol)');
LEGEND_RATES(:,7) = strpad('d/dt q_Na_i in component environment (fmol)');
LEGEND_RATES(:,8) = strpad('d/dt q_Na_o in component environment (fmol)');
LEGEND_RATES(:,5) = strpad('d/dt q_OH_i in component environment (fmol)');
LEGEND_RATES(:,6) = strpad('d/dt q_OH_o in component environment (fmol)');
LEGEND_RATES(:,9) = strpad('d/dt q_H_i in component environment (fmol)');
LEGEND_RATES(:,10) = strpad('d/dt q_H_o in component environment (fmol)');
LEGEND_RATES(:,11) = strpad('d/dt q_B1 in component environment (fmol)');
LEGEND_RATES(:,12) = strpad('d/dt q_HB1 in component environment (fmol)');
LEGEND_RATES(:,13) = strpad('d/dt q_B2 in component environment (fmol)');
LEGEND_RATES(:,14) = strpad('d/dt q_HB2 in component environment (fmol)');
LEGEND_RATES(:,15) = strpad('d/dt q_CO2_i in component environment (fmol)');
LEGEND_RATES(:,16) = strpad('d/dt q_S1_AE in component AE (fmol)');
LEGEND_RATES(:,17) = strpad('d/dt q_S2_AE in component AE (fmol)');
LEGEND_RATES(:,18) = strpad('d/dt q_S3_AE in component AE (fmol)');
LEGEND_RATES(:,19) = strpad('d/dt q_S4_AE in component AE (fmol)');
LEGEND_RATES(:,20) = strpad('d/dt q_S5_AE in component AE (fmol)');
LEGEND_RATES(:,21) = strpad('d/dt q_S6_AE in component AE (fmol)');
LEGEND_RATES(:,22) = strpad('d/dt q_S1_CHE in component CHE (fmol)');
LEGEND_RATES(:,23) = strpad('d/dt q_S2_CHE in component CHE (fmol)');
LEGEND_RATES(:,24) = strpad('d/dt q_S3_CHE in component CHE (fmol)');
LEGEND_RATES(:,25) = strpad('d/dt q_S4_CHE in component CHE (fmol)');
LEGEND_RATES(:,26) = strpad('d/dt q_S5_CHE in component CHE (fmol)');
LEGEND_RATES(:,27) = strpad('d/dt q_S6_CHE in component CHE (fmol)');
LEGEND_RATES(:,28) = strpad('d/dt q_S1_NBC in component NBC (fmol)');
LEGEND_RATES(:,29) = strpad('d/dt q_S2_NBC in component NBC (fmol)');
LEGEND_RATES(:,30) = strpad('d/dt q_S3_NBC in component NBC (fmol)');
LEGEND_RATES(:,31) = strpad('d/dt q_S4_NBC in component NBC (fmol)');
LEGEND_RATES(:,32) = strpad('d/dt q_S5_NBC in component NBC (fmol)');
LEGEND_RATES(:,33) = strpad('d/dt q_S6_NBC in component NBC (fmol)');
LEGEND_RATES(:,34) = strpad('d/dt q_S1_NHE in component NHE (fmol)');
LEGEND_RATES(:,35) = strpad('d/dt q_S2_NHE in component NHE (fmol)');
LEGEND_RATES(:,36) = strpad('d/dt q_S3_NHE in component NHE (fmol)');
LEGEND_RATES(:,37) = strpad('d/dt q_S4_NHE in component NHE (fmol)');
LEGEND_RATES(:,38) = strpad('d/dt q_S5_NHE in component NHE (fmol)');
LEGEND_RATES(:,39) = strpad('d/dt q_S6_NHE in component NHE (fmol)');
LEGEND_STATES = LEGEND_STATES';
LEGEND_ALGEBRAIC = LEGEND_ALGEBRAIC';
LEGEND_RATES = LEGEND_RATES';
LEGEND_CONSTANTS = LEGEND_CONSTANTS';
end
function [STATES, CONSTANTS] = initConsts()
VOI = 0; CONSTANTS = []; STATES = []; ALGEBRAIC = [];
CONSTANTS(:,1) = 16989.7;
CONSTANTS(:,2) = 9.95603e+09;
CONSTANTS(:,3) = 3.34396e+12;
CONSTANTS(:,4) = 124813;
CONSTANTS(:,5) = 3.53951e+12;
CONSTANTS(:,6) = 5.65383e+09;
CONSTANTS(:,7) = 1.51752e-30;
CONSTANTS(:,8) = 3.89362e-30;
CONSTANTS(:,9) = 1.01232e-29;
CONSTANTS(:,10) = 1.09142e-29;
CONSTANTS(:,11) = 1.17671e-29;
CONSTANTS(:,12) = 4.25377e-30;
CONSTANTS(:,13) = 2.47392e+17;
CONSTANTS(:,14) = 6.34754e+17;
CONSTANTS(:,15) = 1.65032e+18;
CONSTANTS(:,16) = 1.77928e+18;
CONSTANTS(:,17) = 1.91832e+18;
CONSTANTS(:,18) = 6.93467e+17;
CONSTANTS(:,19) = 2.66006;
CONSTANTS(:,20) = 0.00948314;
CONSTANTS(:,21) = 894374;
CONSTANTS(:,22) = 0.00338371;
CONSTANTS(:,23) = 5.20571e+07;
CONSTANTS(:,24) = 551967;
CONSTANTS(:,25) = 4.07921e-08;
CONSTANTS(:,26) = 0.00115162;
CONSTANTS(:,27) = 1773.83;
CONSTANTS(:,28) = 0.951701;
CONSTANTS(:,29) = 0.110974;
CONSTANTS(:,30) = 0.0103641;
CONSTANTS(:,31) = 184.891;
CONSTANTS(:,32) = 7.65077e+19;
CONSTANTS(:,33) = 1.15584e+20;
CONSTANTS(:,34) = 6.96298e+20;
CONSTANTS(:,35) = 2.70285e+20;
CONSTANTS(:,36) = 1.45878e+19;
CONSTANTS(:,37) = 2.48755e+19;
CONSTANTS(:,38) = 1.79055e-16;
CONSTANTS(:,39) = 2.70508e-16;
CONSTANTS(:,40) = 1.62959e-15;
CONSTANTS(:,41) = 6.32563e-16;
CONSTANTS(:,42) = 3.41407e-17;
CONSTANTS(:,43) = 5.82174e-17;
CONSTANTS(:,44) = 2.72703e-10;
CONSTANTS(:,45) = 8.07856e-12;
CONSTANTS(:,46) = 0.0305301;
CONSTANTS(:,47) = 3.45577e-10;
CONSTANTS(:,48) = 0.00928252;
CONSTANTS(:,49) = 4.57222e-12;
CONSTANTS(:,50) = 1.86088e+17;
CONSTANTS(:,51) = 2.63374e+17;
CONSTANTS(:,52) = 6.56887e+17;
CONSTANTS(:,53) = 1.05958e+18;
CONSTANTS(:,54) = 4.1238e+17;
CONSTANTS(:,55) = 1.80633e+17;
CONSTANTS(:,56) = 1.21945e-08;
CONSTANTS(:,57) = 0;
CONSTANTS(:,58) = 0.173797;
CONSTANTS(:,59) = 0.344362;
CONSTANTS(:,60) = 3.00818e-05;
CONSTANTS(:,61) = 0.000182919;
CONSTANTS(:,62) = 0.00536147;
CONSTANTS(:,63) = 0.000871028;
CONSTANTS(:,64) = 0.000793158;
CONSTANTS(:,65) = 0.000749338;
CONSTANTS(:,66) = 0.000682347;
CONSTANTS(:,67) = 0.00573416;
CONSTANTS(:,68) = 3.74048e+06;
CONSTANTS(:,69) = 1.86796e+07;
CONSTANTS(:,70) = 0.00283707;
CONSTANTS(:,71) = 17251.5;
CONSTANTS(:,72) = 25.3323;
CONSTANTS(:,73) = 3256.68;
CONSTANTS(:,74) = 5424.75;
CONSTANTS(:,75) = 93.2005;
CONSTANTS(:,76) = 46.3947;
CONSTANTS(:,77) = 0.434702;
CONSTANTS(:,78) = 3.17169e+12;
CONSTANTS(:,79) = 0.000964254;
CONSTANTS(:,80) = 0.00165864;
CONSTANTS(:,81) = 4620.34;
CONSTANTS(:,82) = 2900.41;
CONSTANTS(:,83) = 127.315;
CONSTANTS(:,84) = 19248.9;
CONSTANTS(:,85) = 43706.1;
CONSTANTS(:,86) = 6619.78;
CONSTANTS(:,87) = 4.70821e+09;
CONSTANTS(:,88) = 4.1237e+09;
CONSTANTS(:,89) = 7.5687e+08;
CONSTANTS(:,90) = 1.58488e+09;
CONSTANTS(:,91) = 4.99686e+09;
CONSTANTS(:,92) = 8.26036e+09;
CONSTANTS(:,93) = 8.271e-06;
CONSTANTS(:,94) = 0.000107117;
CONSTANTS(:,95) = 1e-6;
CONSTANTS(:,96) = 1e-6;
STATES(:,1) = 509.2;
STATES(:,2) = 122.2952;
STATES(:,3) = 824.6;
STATES(:,4) = 725.48;
STATES(:,5) = 5.36764E-06;
STATES(:,6) = 1.30166E-06;
STATES(:,7) = 481.46;
STATES(:,8) = 725.48;
STATES(:,9) = 2.69019E-06;
STATES(:,10) = 2.06299E-07;
STATES(:,11) = 3199.6;
STATES(:,12) = 1e-12;
STATES(:,13) = 1117.2;
STATES(:,14) = 1e-12;
STATES(:,15) = 46.968;
CONSTANTS(:,97) = 5.11;
CONSTANTS(:,98) = 1.44;
CONSTANTS(:,99) = 2.91;
CONSTANTS(:,100) = 2.18;
CONSTANTS(:,101) = 3.18;
CONSTANTS(:,102) = 38;
CONSTANTS(:,103) = 5.182;
CONSTANTS(:,104) = 8.31;
CONSTANTS(:,105) = 310;
CONSTANTS(:,106) = 96485;
STATES(:,16) = 1.666e-13;
STATES(:,17) = 1.666e-13;
STATES(:,18) = 1.666e-13;
STATES(:,19) = 1.666e-13;
STATES(:,20) = 1.666e-13;
STATES(:,21) = 1.666e-13;
STATES(:,22) = 1.666e-13;
STATES(:,23) = 1.666e-13;
STATES(:,24) = 1.666e-13;
STATES(:,25) = 1.666e-13;
STATES(:,26) = 1.666e-13;
STATES(:,27) = 1.666e-13;
STATES(:,28) = 1.666e-13;
STATES(:,29) = 1.666e-13;
STATES(:,30) = 1.666e-13;
STATES(:,31) = 1.666e-13;
STATES(:,32) = 1.666e-13;
STATES(:,33) = 1.666e-13;
STATES(:,34) = 1.666e-13;
STATES(:,35) = 1.666e-13;
STATES(:,36) = 1.666e-13;
STATES(:,37) = 1.666e-13;
STATES(:,38) = 1.666e-13;
STATES(:,39) = 1.666e-13;
if (isempty(STATES)), warning('Initial values for states not set');, end
end
function [RATES, ALGEBRAIC] = computeRates(VOI, STATES, CONSTANTS)
disp(VOI)
global algebraicVariableCount;
statesSize = size(STATES);
statesColumnCount = statesSize(2);
if ( statesColumnCount == 1)
STATES = STATES';
ALGEBRAIC = zeros(1, algebraicVariableCount);
utilOnes = 1;
else
statesRowCount = statesSize(1);
ALGEBRAIC = zeros(statesRowCount, algebraicVariableCount);
RATES = zeros(statesRowCount, statesColumnCount);
utilOnes = ones(statesRowCount, 1);
end
ALGEBRAIC(:,9) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,62).*STATES(:,16));
ALGEBRAIC(:,14) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,67).*STATES(:,21));
ALGEBRAIC(:,17) = CONSTANTS(:,1).*(exp(ALGEBRAIC(:,14)./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,9)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,6) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,59).*STATES(:,2));
ALGEBRAIC(:,10) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,63).*STATES(:,17));
ALGEBRAIC(:,18) = CONSTANTS(:,2).*(exp(ALGEBRAIC(:,9)./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp((ALGEBRAIC(:,10)+ALGEBRAIC(:,6))./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,15) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,68).*STATES(:,9));
ALGEBRAIC(:,24) = CONSTANTS(:,7).*(exp((ALGEBRAIC(:,14)+ CONSTANTS(:,97).*ALGEBRAIC(:,15))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,9)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,26) = CONSTANTS(:,8).*(exp((ALGEBRAIC(:,9)+ CONSTANTS(:,97).*ALGEBRAIC(:,15))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,10)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,16) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,69).*STATES(:,10));
ALGEBRAIC(:,39) = CONSTANTS(:,13).*(exp((ALGEBRAIC(:,14) - CONSTANTS(:,98).*ALGEBRAIC(:,16))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,9)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,41) = CONSTANTS(:,14).*(exp((ALGEBRAIC(:,9) - CONSTANTS(:,98).*ALGEBRAIC(:,16))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,10)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
RATES(:,16) = ((((ALGEBRAIC(:,17) - ALGEBRAIC(:,18))+ALGEBRAIC(:,24)) - ALGEBRAIC(:,26))+ALGEBRAIC(:,39)) - ALGEBRAIC(:,41);
ALGEBRAIC(:,8) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,61).*STATES(:,4));
ALGEBRAIC(:,11) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,64).*STATES(:,18));
ALGEBRAIC(:,19) = CONSTANTS(:,3).*(exp((ALGEBRAIC(:,10)+ALGEBRAIC(:,8))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,11)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,28) = CONSTANTS(:,9).*(exp((ALGEBRAIC(:,10)+ CONSTANTS(:,97).*ALGEBRAIC(:,15))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,11)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,43) = CONSTANTS(:,15).*(exp((ALGEBRAIC(:,10) - CONSTANTS(:,98).*ALGEBRAIC(:,16))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,11)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
RATES(:,17) = ((((ALGEBRAIC(:,18) - ALGEBRAIC(:,19))+ALGEBRAIC(:,26)) - ALGEBRAIC(:,28))+ALGEBRAIC(:,41)) - ALGEBRAIC(:,43);
ALGEBRAIC(:,25) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,71).*STATES(:,6));
ALGEBRAIC(:,31) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,72).*STATES(:,22));
ALGEBRAIC(:,32) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,73).*STATES(:,23));
ALGEBRAIC(:,44) = CONSTANTS(:,20).*(exp(ALGEBRAIC(:,31)./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp((ALGEBRAIC(:,32)+ALGEBRAIC(:,25))./( CONSTANTS(:,104).*CONSTANTS(:,105))));
RATES(:,6) = ALGEBRAIC(:,44);
ALGEBRAIC(:,12) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,65).*STATES(:,19));
ALGEBRAIC(:,20) = CONSTANTS(:,4).*(exp(ALGEBRAIC(:,11)./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,12)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,30) = CONSTANTS(:,10).*(exp((ALGEBRAIC(:,11)+ CONSTANTS(:,97).*ALGEBRAIC(:,15))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,12)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,45) = CONSTANTS(:,16).*(exp((ALGEBRAIC(:,11) - CONSTANTS(:,98).*ALGEBRAIC(:,16))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,12)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
RATES(:,18) = ((((ALGEBRAIC(:,19) - ALGEBRAIC(:,20))+ALGEBRAIC(:,28)) - ALGEBRAIC(:,30))+ALGEBRAIC(:,43)) - ALGEBRAIC(:,45);
ALGEBRAIC(:,40) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,77).*STATES(:,27));
ALGEBRAIC(:,42) = CONSTANTS(:,19).*(exp(ALGEBRAIC(:,40)./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,31)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
RATES(:,22) = ALGEBRAIC(:,42) - ALGEBRAIC(:,44);
ALGEBRAIC(:,29) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,61).*STATES(:,4));
ALGEBRAIC(:,34) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,74).*STATES(:,24));
ALGEBRAIC(:,46) = CONSTANTS(:,21).*(exp((ALGEBRAIC(:,32)+ALGEBRAIC(:,29))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,34)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
RATES(:,4) = - ALGEBRAIC(:,19) - ALGEBRAIC(:,46);
ALGEBRAIC(:,7) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,60).*STATES(:,3));
ALGEBRAIC(:,13) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,66).*STATES(:,20));
ALGEBRAIC(:,21) = CONSTANTS(:,5).*(exp(ALGEBRAIC(:,12)./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp((ALGEBRAIC(:,13)+ALGEBRAIC(:,7))./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,33) = CONSTANTS(:,11).*(exp((ALGEBRAIC(:,12)+ CONSTANTS(:,97).*ALGEBRAIC(:,15))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,13)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,47) = CONSTANTS(:,17).*(exp((ALGEBRAIC(:,12) - CONSTANTS(:,98).*ALGEBRAIC(:,16))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,13)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
RATES(:,19) = ((((ALGEBRAIC(:,20) - ALGEBRAIC(:,21))+ALGEBRAIC(:,30)) - ALGEBRAIC(:,33))+ALGEBRAIC(:,45)) - ALGEBRAIC(:,47);
RATES(:,23) = ALGEBRAIC(:,44) - ALGEBRAIC(:,46);
ALGEBRAIC(:,3) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,58).*STATES(:,1));
ALGEBRAIC(:,22) = CONSTANTS(:,6).*(exp((ALGEBRAIC(:,13)+ALGEBRAIC(:,3))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,14)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,35) = CONSTANTS(:,12).*(exp((ALGEBRAIC(:,13)+ CONSTANTS(:,97).*ALGEBRAIC(:,15))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,14)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,49) = CONSTANTS(:,18).*(exp((ALGEBRAIC(:,13) - CONSTANTS(:,98).*ALGEBRAIC(:,16))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,14)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
RATES(:,20) = ((((ALGEBRAIC(:,21) - ALGEBRAIC(:,22))+ALGEBRAIC(:,33)) - ALGEBRAIC(:,35))+ALGEBRAIC(:,47)) - ALGEBRAIC(:,49);
RATES(:,21) = ((((ALGEBRAIC(:,22) - ALGEBRAIC(:,17))+ALGEBRAIC(:,35)) - ALGEBRAIC(:,24))+ALGEBRAIC(:,49)) - ALGEBRAIC(:,39);
ALGEBRAIC(:,36) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,75).*STATES(:,25));
ALGEBRAIC(:,48) = CONSTANTS(:,22).*(exp(ALGEBRAIC(:,34)./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,36)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
RATES(:,24) = ALGEBRAIC(:,46) - ALGEBRAIC(:,48);
ALGEBRAIC(:,27) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,60).*STATES(:,3));
ALGEBRAIC(:,38) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,76).*STATES(:,26));
ALGEBRAIC(:,50) = CONSTANTS(:,23).*(exp(ALGEBRAIC(:,36)./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp((ALGEBRAIC(:,38)+ALGEBRAIC(:,27))./( CONSTANTS(:,104).*CONSTANTS(:,105))));
RATES(:,3) = ALGEBRAIC(:,21)+ALGEBRAIC(:,50);
RATES(:,25) = ALGEBRAIC(:,48) - ALGEBRAIC(:,50);
ALGEBRAIC(:,23) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,70).*STATES(:,5));
ALGEBRAIC(:,52) = CONSTANTS(:,24).*(exp((ALGEBRAIC(:,38)+ALGEBRAIC(:,23))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,40)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
RATES(:,5) = - ALGEBRAIC(:,52);
RATES(:,26) = ALGEBRAIC(:,50) - ALGEBRAIC(:,52);
RATES(:,27) = ALGEBRAIC(:,52) - ALGEBRAIC(:,42);
ALGEBRAIC(:,53) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,78).*STATES(:,15));
ALGEBRAIC(:,54) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,58).*STATES(:,1));
ALGEBRAIC(:,55) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,68).*STATES(:,9));
ALGEBRAIC(:,56) = CONSTANTS(:,25).*(exp(ALGEBRAIC(:,53)./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp((ALGEBRAIC(:,54)+ALGEBRAIC(:,55))./( CONSTANTS(:,104).*CONSTANTS(:,105))));
RATES(:,15) = - ALGEBRAIC(:,56);
ALGEBRAIC(:,60) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,59).*STATES(:,2));
ALGEBRAIC(:,62) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,82).*STATES(:,29));
ALGEBRAIC(:,63) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,83).*STATES(:,30));
ALGEBRAIC(:,71) = CONSTANTS(:,28).*(exp((ALGEBRAIC(:,60)+ALGEBRAIC(:,62))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,63)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
RATES(:,2) = ALGEBRAIC(:,18) - ALGEBRAIC(:,71);
ALGEBRAIC(:,59) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,58).*STATES(:,1));
ALGEBRAIC(:,64) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,84).*STATES(:,31));
ALGEBRAIC(:,65) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,85).*STATES(:,32));
ALGEBRAIC(:,73) = CONSTANTS(:,30).*(exp(ALGEBRAIC(:,64)./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp((ALGEBRAIC(:,65)+ALGEBRAIC(:,59))./( CONSTANTS(:,104).*CONSTANTS(:,105))));
RATES(:,1) = - ALGEBRAIC(:,22)+ALGEBRAIC(:,73)+ALGEBRAIC(:,56);
ALGEBRAIC(:,61) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,81).*STATES(:,28));
ALGEBRAIC(:,66) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,86).*STATES(:,33));
ALGEBRAIC(:,69) = CONSTANTS(:,26).*(exp(ALGEBRAIC(:,66)./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,61)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,58) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,80).*STATES(:,8));
ALGEBRAIC(:,70) = CONSTANTS(:,27).*(exp((ALGEBRAIC(:,58)+ALGEBRAIC(:,61))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,62)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,67) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,68).*STATES(:,9));
ALGEBRAIC(:,75) = CONSTANTS(:,32).*(exp((ALGEBRAIC(:,66) - CONSTANTS(:,99).*ALGEBRAIC(:,67))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,61)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,76) = CONSTANTS(:,33).*(exp((ALGEBRAIC(:,61) - CONSTANTS(:,99).*ALGEBRAIC(:,67))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,62)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,68) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,69).*STATES(:,10));
ALGEBRAIC(:,82) = CONSTANTS(:,38).*(exp((ALGEBRAIC(:,66)+ CONSTANTS(:,100).*ALGEBRAIC(:,68))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,61)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,83) = CONSTANTS(:,39).*(exp((ALGEBRAIC(:,61)+ CONSTANTS(:,100).*ALGEBRAIC(:,68))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,62)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
RATES(:,28) = ((((ALGEBRAIC(:,69) - ALGEBRAIC(:,70))+ALGEBRAIC(:,75)) - ALGEBRAIC(:,76))+ALGEBRAIC(:,82)) - ALGEBRAIC(:,83);
ALGEBRAIC(:,77) = CONSTANTS(:,34).*(exp((ALGEBRAIC(:,62) - CONSTANTS(:,99).*ALGEBRAIC(:,67))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,63)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,84) = CONSTANTS(:,40).*(exp((ALGEBRAIC(:,62)+ CONSTANTS(:,100).*ALGEBRAIC(:,68))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,63)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
RATES(:,29) = ((((ALGEBRAIC(:,70) - ALGEBRAIC(:,71))+ALGEBRAIC(:,76)) - ALGEBRAIC(:,77))+ALGEBRAIC(:,83)) - ALGEBRAIC(:,84);
ALGEBRAIC(:,72) = CONSTANTS(:,29).*(exp(ALGEBRAIC(:,63)./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,64)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,78) = CONSTANTS(:,35).*(exp((ALGEBRAIC(:,63) - CONSTANTS(:,99).*ALGEBRAIC(:,67))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,64)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,85) = CONSTANTS(:,41).*(exp((ALGEBRAIC(:,63)+ CONSTANTS(:,100).*ALGEBRAIC(:,68))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,64)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
RATES(:,30) = ((((ALGEBRAIC(:,71) - ALGEBRAIC(:,72))+ALGEBRAIC(:,77)) - ALGEBRAIC(:,78))+ALGEBRAIC(:,84)) - ALGEBRAIC(:,85);
ALGEBRAIC(:,79) = CONSTANTS(:,36).*(exp((ALGEBRAIC(:,64) - CONSTANTS(:,99).*ALGEBRAIC(:,67))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,65)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,86) = CONSTANTS(:,42).*(exp((ALGEBRAIC(:,64)+ CONSTANTS(:,100).*ALGEBRAIC(:,68))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,65)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
RATES(:,31) = ((((ALGEBRAIC(:,72) - ALGEBRAIC(:,73))+ALGEBRAIC(:,78)) - ALGEBRAIC(:,79))+ALGEBRAIC(:,85)) - ALGEBRAIC(:,86);
ALGEBRAIC(:,57) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,79).*STATES(:,7));
ALGEBRAIC(:,74) = CONSTANTS(:,31).*(exp(ALGEBRAIC(:,65)./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp((ALGEBRAIC(:,66)+ALGEBRAIC(:,57))./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,80) = CONSTANTS(:,37).*(exp((ALGEBRAIC(:,65) - CONSTANTS(:,99).*ALGEBRAIC(:,67))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,66)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,87) = CONSTANTS(:,43).*(exp((ALGEBRAIC(:,65)+ CONSTANTS(:,100).*ALGEBRAIC(:,68))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,66)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
RATES(:,32) = ((((ALGEBRAIC(:,73) - ALGEBRAIC(:,74))+ALGEBRAIC(:,79)) - ALGEBRAIC(:,80))+ALGEBRAIC(:,86)) - ALGEBRAIC(:,87);
RATES(:,33) = ((((ALGEBRAIC(:,74) - ALGEBRAIC(:,69))+ALGEBRAIC(:,80)) - ALGEBRAIC(:,75))+ALGEBRAIC(:,87)) - ALGEBRAIC(:,82);
ALGEBRAIC(:,90) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,69).*STATES(:,10));
ALGEBRAIC(:,93) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,87).*STATES(:,34));
ALGEBRAIC(:,94) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,88).*STATES(:,35));
ALGEBRAIC(:,100) = CONSTANTS(:,45).*(exp(ALGEBRAIC(:,93)./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp((ALGEBRAIC(:,94)+ALGEBRAIC(:,90))./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,88) = - CONSTANTS(:,100).*(ALGEBRAIC(:,82)+ALGEBRAIC(:,83)+ALGEBRAIC(:,84)+ALGEBRAIC(:,85)+ALGEBRAIC(:,86)+ALGEBRAIC(:,87));
ALGEBRAIC(:,51) = CONSTANTS(:,98).*(ALGEBRAIC(:,39)+ALGEBRAIC(:,41)+ALGEBRAIC(:,43)+ALGEBRAIC(:,45)+ALGEBRAIC(:,47)+ALGEBRAIC(:,49));
RATES(:,10) = ALGEBRAIC(:,100)+ALGEBRAIC(:,88)+ALGEBRAIC(:,51);
ALGEBRAIC(:,92) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,80).*STATES(:,8));
ALGEBRAIC(:,95) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,89).*STATES(:,36));
ALGEBRAIC(:,101) = CONSTANTS(:,46).*(exp((ALGEBRAIC(:,94)+ALGEBRAIC(:,92))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,95)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
RATES(:,8) = - ALGEBRAIC(:,70) - ALGEBRAIC(:,101);
ALGEBRAIC(:,91) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,79).*STATES(:,7));
ALGEBRAIC(:,96) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,90).*STATES(:,37));
ALGEBRAIC(:,97) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,91).*STATES(:,38));
ALGEBRAIC(:,103) = CONSTANTS(:,48).*(exp(ALGEBRAIC(:,96)./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp((ALGEBRAIC(:,97)+ALGEBRAIC(:,91))./( CONSTANTS(:,104).*CONSTANTS(:,105))));
RATES(:,7) = ALGEBRAIC(:,74)+ALGEBRAIC(:,103);
ALGEBRAIC(:,98) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,92).*STATES(:,39));
ALGEBRAIC(:,99) = CONSTANTS(:,44).*(exp(ALGEBRAIC(:,98)./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,93)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,89) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,68).*STATES(:,9));
ALGEBRAIC(:,105) = CONSTANTS(:,50).*(exp((ALGEBRAIC(:,98) - CONSTANTS(:,101).*ALGEBRAIC(:,89))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,93)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,106) = CONSTANTS(:,51).*(exp((ALGEBRAIC(:,93) - CONSTANTS(:,101).*ALGEBRAIC(:,89))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,94)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
RATES(:,34) = ((ALGEBRAIC(:,99) - ALGEBRAIC(:,100))+ALGEBRAIC(:,105)) - ALGEBRAIC(:,106);
ALGEBRAIC(:,107) = CONSTANTS(:,52).*(exp((ALGEBRAIC(:,94) - CONSTANTS(:,101).*ALGEBRAIC(:,89))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,95)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
RATES(:,35) = ((ALGEBRAIC(:,100) - ALGEBRAIC(:,101))+ALGEBRAIC(:,106)) - ALGEBRAIC(:,107);
ALGEBRAIC(:,102) = CONSTANTS(:,47).*(exp(ALGEBRAIC(:,95)./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,96)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,108) = CONSTANTS(:,53).*(exp((ALGEBRAIC(:,95) - CONSTANTS(:,101).*ALGEBRAIC(:,89))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,96)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
RATES(:,36) = ((ALGEBRAIC(:,101) - ALGEBRAIC(:,102))+ALGEBRAIC(:,107)) - ALGEBRAIC(:,108);
ALGEBRAIC(:,109) = CONSTANTS(:,54).*(exp((ALGEBRAIC(:,96) - CONSTANTS(:,101).*ALGEBRAIC(:,89))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,97)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
RATES(:,37) = ((ALGEBRAIC(:,102) - ALGEBRAIC(:,103))+ALGEBRAIC(:,108)) - ALGEBRAIC(:,109);
ALGEBRAIC(:,104) = CONSTANTS(:,49).*(exp((ALGEBRAIC(:,97)+ALGEBRAIC(:,89))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,98)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,110) = CONSTANTS(:,55).*(exp((ALGEBRAIC(:,97) - CONSTANTS(:,101).*ALGEBRAIC(:,89))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,98)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
RATES(:,38) = ((ALGEBRAIC(:,103) - ALGEBRAIC(:,104))+ALGEBRAIC(:,109)) - ALGEBRAIC(:,110);
RATES(:,39) = ((ALGEBRAIC(:,104) - ALGEBRAIC(:,99))+ALGEBRAIC(:,110)) - ALGEBRAIC(:,105);
ALGEBRAIC(:,112) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,68).*STATES(:,9));
ALGEBRAIC(:,113) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,93).*STATES(:,11));
ALGEBRAIC(:,114) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,94).*STATES(:,12));
ALGEBRAIC(:,115) = CONSTANTS(:,56).*(exp((ALGEBRAIC(:,112)+ALGEBRAIC(:,113)+ 2.00000.*ALGEBRAIC(:,112))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp((ALGEBRAIC(:,114)+ 2.00000.*ALGEBRAIC(:,112))./( CONSTANTS(:,104).*CONSTANTS(:,105))));
RATES(:,11) = - ALGEBRAIC(:,115);
RATES(:,12) = ALGEBRAIC(:,115);
ALGEBRAIC(:,116) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,68).*STATES(:,9));
ALGEBRAIC(:,117) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,95).*STATES(:,13));
ALGEBRAIC(:,118) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,96).*STATES(:,14));
ALGEBRAIC(:,119) = CONSTANTS(:,57).*(exp((ALGEBRAIC(:,116)+ALGEBRAIC(:,117))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,118)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,81) = CONSTANTS(:,99).*(ALGEBRAIC(:,75)+ALGEBRAIC(:,76)+ALGEBRAIC(:,77)+ALGEBRAIC(:,78)+ALGEBRAIC(:,79)+ALGEBRAIC(:,80));
ALGEBRAIC(:,111) = CONSTANTS(:,101).*(ALGEBRAIC(:,105)+ALGEBRAIC(:,106)+ALGEBRAIC(:,107)+ALGEBRAIC(:,108)+ALGEBRAIC(:,109)+ALGEBRAIC(:,110));
ALGEBRAIC(:,37) = - CONSTANTS(:,97).*(ALGEBRAIC(:,24)+ALGEBRAIC(:,26)+ALGEBRAIC(:,28)+ALGEBRAIC(:,30)+ALGEBRAIC(:,33)+ALGEBRAIC(:,35));
RATES(:,9) = (( - ALGEBRAIC(:,104) - ALGEBRAIC(:,115)) - ALGEBRAIC(:,119))+ALGEBRAIC(:,56)+ALGEBRAIC(:,81)+ALGEBRAIC(:,111)+ALGEBRAIC(:,37);
RATES(:,13) = - ALGEBRAIC(:,119);
RATES(:,14) = ALGEBRAIC(:,119);
RATES = RATES';
end
% Calculate algebraic variables
function ALGEBRAIC = computeAlgebraic(ALGEBRAIC, CONSTANTS, STATES, VOI)
statesSize = size(STATES);
statesColumnCount = statesSize(2);
if ( statesColumnCount == 1)
STATES = STATES';
utilOnes = 1;
else
statesRowCount = statesSize(1);
utilOnes = ones(statesRowCount, 1);
end
ALGEBRAIC(:,9) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,62).*STATES(:,16));
ALGEBRAIC(:,14) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,67).*STATES(:,21));
ALGEBRAIC(:,17) = CONSTANTS(:,1).*(exp(ALGEBRAIC(:,14)./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,9)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,6) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,59).*STATES(:,2));
ALGEBRAIC(:,10) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,63).*STATES(:,17));
ALGEBRAIC(:,18) = CONSTANTS(:,2).*(exp(ALGEBRAIC(:,9)./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp((ALGEBRAIC(:,10)+ALGEBRAIC(:,6))./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,15) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,68).*STATES(:,9));
ALGEBRAIC(:,24) = CONSTANTS(:,7).*(exp((ALGEBRAIC(:,14)+ CONSTANTS(:,97).*ALGEBRAIC(:,15))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,9)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,26) = CONSTANTS(:,8).*(exp((ALGEBRAIC(:,9)+ CONSTANTS(:,97).*ALGEBRAIC(:,15))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,10)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,16) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,69).*STATES(:,10));
ALGEBRAIC(:,39) = CONSTANTS(:,13).*(exp((ALGEBRAIC(:,14) - CONSTANTS(:,98).*ALGEBRAIC(:,16))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,9)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,41) = CONSTANTS(:,14).*(exp((ALGEBRAIC(:,9) - CONSTANTS(:,98).*ALGEBRAIC(:,16))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,10)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,8) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,61).*STATES(:,4));
ALGEBRAIC(:,11) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,64).*STATES(:,18));
ALGEBRAIC(:,19) = CONSTANTS(:,3).*(exp((ALGEBRAIC(:,10)+ALGEBRAIC(:,8))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,11)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,28) = CONSTANTS(:,9).*(exp((ALGEBRAIC(:,10)+ CONSTANTS(:,97).*ALGEBRAIC(:,15))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,11)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,43) = CONSTANTS(:,15).*(exp((ALGEBRAIC(:,10) - CONSTANTS(:,98).*ALGEBRAIC(:,16))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,11)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,25) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,71).*STATES(:,6));
ALGEBRAIC(:,31) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,72).*STATES(:,22));
ALGEBRAIC(:,32) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,73).*STATES(:,23));
ALGEBRAIC(:,44) = CONSTANTS(:,20).*(exp(ALGEBRAIC(:,31)./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp((ALGEBRAIC(:,32)+ALGEBRAIC(:,25))./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,12) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,65).*STATES(:,19));
ALGEBRAIC(:,20) = CONSTANTS(:,4).*(exp(ALGEBRAIC(:,11)./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,12)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,30) = CONSTANTS(:,10).*(exp((ALGEBRAIC(:,11)+ CONSTANTS(:,97).*ALGEBRAIC(:,15))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,12)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,45) = CONSTANTS(:,16).*(exp((ALGEBRAIC(:,11) - CONSTANTS(:,98).*ALGEBRAIC(:,16))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,12)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,40) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,77).*STATES(:,27));
ALGEBRAIC(:,42) = CONSTANTS(:,19).*(exp(ALGEBRAIC(:,40)./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,31)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,29) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,61).*STATES(:,4));
ALGEBRAIC(:,34) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,74).*STATES(:,24));
ALGEBRAIC(:,46) = CONSTANTS(:,21).*(exp((ALGEBRAIC(:,32)+ALGEBRAIC(:,29))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,34)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,7) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,60).*STATES(:,3));
ALGEBRAIC(:,13) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,66).*STATES(:,20));
ALGEBRAIC(:,21) = CONSTANTS(:,5).*(exp(ALGEBRAIC(:,12)./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp((ALGEBRAIC(:,13)+ALGEBRAIC(:,7))./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,33) = CONSTANTS(:,11).*(exp((ALGEBRAIC(:,12)+ CONSTANTS(:,97).*ALGEBRAIC(:,15))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,13)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,47) = CONSTANTS(:,17).*(exp((ALGEBRAIC(:,12) - CONSTANTS(:,98).*ALGEBRAIC(:,16))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,13)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,3) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,58).*STATES(:,1));
ALGEBRAIC(:,22) = CONSTANTS(:,6).*(exp((ALGEBRAIC(:,13)+ALGEBRAIC(:,3))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,14)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,35) = CONSTANTS(:,12).*(exp((ALGEBRAIC(:,13)+ CONSTANTS(:,97).*ALGEBRAIC(:,15))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,14)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,49) = CONSTANTS(:,18).*(exp((ALGEBRAIC(:,13) - CONSTANTS(:,98).*ALGEBRAIC(:,16))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,14)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,36) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,75).*STATES(:,25));
ALGEBRAIC(:,48) = CONSTANTS(:,22).*(exp(ALGEBRAIC(:,34)./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,36)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,27) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,60).*STATES(:,3));
ALGEBRAIC(:,38) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,76).*STATES(:,26));
ALGEBRAIC(:,50) = CONSTANTS(:,23).*(exp(ALGEBRAIC(:,36)./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp((ALGEBRAIC(:,38)+ALGEBRAIC(:,27))./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,23) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,70).*STATES(:,5));
ALGEBRAIC(:,52) = CONSTANTS(:,24).*(exp((ALGEBRAIC(:,38)+ALGEBRAIC(:,23))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,40)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,53) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,78).*STATES(:,15));
ALGEBRAIC(:,54) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,58).*STATES(:,1));
ALGEBRAIC(:,55) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,68).*STATES(:,9));
ALGEBRAIC(:,56) = CONSTANTS(:,25).*(exp(ALGEBRAIC(:,53)./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp((ALGEBRAIC(:,54)+ALGEBRAIC(:,55))./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,60) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,59).*STATES(:,2));
ALGEBRAIC(:,62) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,82).*STATES(:,29));
ALGEBRAIC(:,63) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,83).*STATES(:,30));
ALGEBRAIC(:,71) = CONSTANTS(:,28).*(exp((ALGEBRAIC(:,60)+ALGEBRAIC(:,62))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,63)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,59) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,58).*STATES(:,1));
ALGEBRAIC(:,64) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,84).*STATES(:,31));
ALGEBRAIC(:,65) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,85).*STATES(:,32));
ALGEBRAIC(:,73) = CONSTANTS(:,30).*(exp(ALGEBRAIC(:,64)./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp((ALGEBRAIC(:,65)+ALGEBRAIC(:,59))./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,61) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,81).*STATES(:,28));
ALGEBRAIC(:,66) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,86).*STATES(:,33));
ALGEBRAIC(:,69) = CONSTANTS(:,26).*(exp(ALGEBRAIC(:,66)./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,61)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,58) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,80).*STATES(:,8));
ALGEBRAIC(:,70) = CONSTANTS(:,27).*(exp((ALGEBRAIC(:,58)+ALGEBRAIC(:,61))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,62)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,67) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,68).*STATES(:,9));
ALGEBRAIC(:,75) = CONSTANTS(:,32).*(exp((ALGEBRAIC(:,66) - CONSTANTS(:,99).*ALGEBRAIC(:,67))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,61)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,76) = CONSTANTS(:,33).*(exp((ALGEBRAIC(:,61) - CONSTANTS(:,99).*ALGEBRAIC(:,67))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,62)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,68) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,69).*STATES(:,10));
ALGEBRAIC(:,82) = CONSTANTS(:,38).*(exp((ALGEBRAIC(:,66)+ CONSTANTS(:,100).*ALGEBRAIC(:,68))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,61)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,83) = CONSTANTS(:,39).*(exp((ALGEBRAIC(:,61)+ CONSTANTS(:,100).*ALGEBRAIC(:,68))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,62)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,77) = CONSTANTS(:,34).*(exp((ALGEBRAIC(:,62) - CONSTANTS(:,99).*ALGEBRAIC(:,67))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,63)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,84) = CONSTANTS(:,40).*(exp((ALGEBRAIC(:,62)+ CONSTANTS(:,100).*ALGEBRAIC(:,68))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,63)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,72) = CONSTANTS(:,29).*(exp(ALGEBRAIC(:,63)./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,64)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,78) = CONSTANTS(:,35).*(exp((ALGEBRAIC(:,63) - CONSTANTS(:,99).*ALGEBRAIC(:,67))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,64)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,85) = CONSTANTS(:,41).*(exp((ALGEBRAIC(:,63)+ CONSTANTS(:,100).*ALGEBRAIC(:,68))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,64)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,79) = CONSTANTS(:,36).*(exp((ALGEBRAIC(:,64) - CONSTANTS(:,99).*ALGEBRAIC(:,67))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,65)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,86) = CONSTANTS(:,42).*(exp((ALGEBRAIC(:,64)+ CONSTANTS(:,100).*ALGEBRAIC(:,68))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,65)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,57) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,79).*STATES(:,7));
ALGEBRAIC(:,74) = CONSTANTS(:,31).*(exp(ALGEBRAIC(:,65)./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp((ALGEBRAIC(:,66)+ALGEBRAIC(:,57))./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,80) = CONSTANTS(:,37).*(exp((ALGEBRAIC(:,65) - CONSTANTS(:,99).*ALGEBRAIC(:,67))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,66)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,87) = CONSTANTS(:,43).*(exp((ALGEBRAIC(:,65)+ CONSTANTS(:,100).*ALGEBRAIC(:,68))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,66)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,90) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,69).*STATES(:,10));
ALGEBRAIC(:,93) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,87).*STATES(:,34));
ALGEBRAIC(:,94) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,88).*STATES(:,35));
ALGEBRAIC(:,100) = CONSTANTS(:,45).*(exp(ALGEBRAIC(:,93)./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp((ALGEBRAIC(:,94)+ALGEBRAIC(:,90))./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,88) = - CONSTANTS(:,100).*(ALGEBRAIC(:,82)+ALGEBRAIC(:,83)+ALGEBRAIC(:,84)+ALGEBRAIC(:,85)+ALGEBRAIC(:,86)+ALGEBRAIC(:,87));
ALGEBRAIC(:,51) = CONSTANTS(:,98).*(ALGEBRAIC(:,39)+ALGEBRAIC(:,41)+ALGEBRAIC(:,43)+ALGEBRAIC(:,45)+ALGEBRAIC(:,47)+ALGEBRAIC(:,49));
ALGEBRAIC(:,92) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,80).*STATES(:,8));
ALGEBRAIC(:,95) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,89).*STATES(:,36));
ALGEBRAIC(:,101) = CONSTANTS(:,46).*(exp((ALGEBRAIC(:,94)+ALGEBRAIC(:,92))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,95)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,91) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,79).*STATES(:,7));
ALGEBRAIC(:,96) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,90).*STATES(:,37));
ALGEBRAIC(:,97) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,91).*STATES(:,38));
ALGEBRAIC(:,103) = CONSTANTS(:,48).*(exp(ALGEBRAIC(:,96)./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp((ALGEBRAIC(:,97)+ALGEBRAIC(:,91))./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,98) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,92).*STATES(:,39));
ALGEBRAIC(:,99) = CONSTANTS(:,44).*(exp(ALGEBRAIC(:,98)./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,93)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,89) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,68).*STATES(:,9));
ALGEBRAIC(:,105) = CONSTANTS(:,50).*(exp((ALGEBRAIC(:,98) - CONSTANTS(:,101).*ALGEBRAIC(:,89))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,93)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,106) = CONSTANTS(:,51).*(exp((ALGEBRAIC(:,93) - CONSTANTS(:,101).*ALGEBRAIC(:,89))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,94)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,107) = CONSTANTS(:,52).*(exp((ALGEBRAIC(:,94) - CONSTANTS(:,101).*ALGEBRAIC(:,89))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,95)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,102) = CONSTANTS(:,47).*(exp(ALGEBRAIC(:,95)./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,96)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,108) = CONSTANTS(:,53).*(exp((ALGEBRAIC(:,95) - CONSTANTS(:,101).*ALGEBRAIC(:,89))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,96)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,109) = CONSTANTS(:,54).*(exp((ALGEBRAIC(:,96) - CONSTANTS(:,101).*ALGEBRAIC(:,89))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,97)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,104) = CONSTANTS(:,49).*(exp((ALGEBRAIC(:,97)+ALGEBRAIC(:,89))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,98)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,110) = CONSTANTS(:,55).*(exp((ALGEBRAIC(:,97) - CONSTANTS(:,101).*ALGEBRAIC(:,89))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,98)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,112) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,68).*STATES(:,9));
ALGEBRAIC(:,113) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,93).*STATES(:,11));
ALGEBRAIC(:,114) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,94).*STATES(:,12));
ALGEBRAIC(:,115) = CONSTANTS(:,56).*(exp((ALGEBRAIC(:,112)+ALGEBRAIC(:,113)+ 2.00000.*ALGEBRAIC(:,112))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp((ALGEBRAIC(:,114)+ 2.00000.*ALGEBRAIC(:,112))./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,116) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,68).*STATES(:,9));
ALGEBRAIC(:,117) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,95).*STATES(:,13));
ALGEBRAIC(:,118) = CONSTANTS(:,104).*CONSTANTS(:,105).*log( CONSTANTS(:,96).*STATES(:,14));
ALGEBRAIC(:,119) = CONSTANTS(:,57).*(exp((ALGEBRAIC(:,116)+ALGEBRAIC(:,117))./( CONSTANTS(:,104).*CONSTANTS(:,105))) - exp(ALGEBRAIC(:,118)./( CONSTANTS(:,104).*CONSTANTS(:,105))));
ALGEBRAIC(:,81) = CONSTANTS(:,99).*(ALGEBRAIC(:,75)+ALGEBRAIC(:,76)+ALGEBRAIC(:,77)+ALGEBRAIC(:,78)+ALGEBRAIC(:,79)+ALGEBRAIC(:,80));
ALGEBRAIC(:,111) = CONSTANTS(:,101).*(ALGEBRAIC(:,105)+ALGEBRAIC(:,106)+ALGEBRAIC(:,107)+ALGEBRAIC(:,108)+ALGEBRAIC(:,109)+ALGEBRAIC(:,110));
ALGEBRAIC(:,37) = - CONSTANTS(:,97).*(ALGEBRAIC(:,24)+ALGEBRAIC(:,26)+ALGEBRAIC(:,28)+ALGEBRAIC(:,30)+ALGEBRAIC(:,33)+ALGEBRAIC(:,35));
ALGEBRAIC(:,1) = STATES(:,9)./CONSTANTS(:,102);
ALGEBRAIC(:,2) = STATES(:,10)./CONSTANTS(:,103);
ALGEBRAIC(:,4) = - arbitrary_log(ALGEBRAIC(:,1), 10);
ALGEBRAIC(:,5) = - arbitrary_log(ALGEBRAIC(:,2), 10);
end
% Compute a logarithm to any base" +
function x = arbitrary_log(a, base)
x = log(a) ./ log(base);
end
% Pad out or shorten strings to a set length
function strout = strpad(strin)
req_length = 160;
insize = size(strin,2);
if insize > req_length
strout = strin(1:req_length);
else
strout = [strin, blanks(req_length - insize)];
end
end
