Location: Generic human gastrointestinal tract scaffold @ bbcbb74e4644 / ViewCreation-previous-docs / document-bae73f57.json

Author:
mlin865 <mlin865@aucklanduni.ac.nz>
Date:
2024-08-19 17:14:25+12:00
Desc:
Add files for human GI Tract
Permanent Source URI:
http://models.cellml.org/workspace/ba3/rawfile/bbcbb74e46446e8855eb6178c20d31b2546dee8e/ViewCreation-previous-docs/document-bae73f57.json

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