- Author:
- Mona Zhu <devnull@localhost>
- Date:
- 2011-01-17 10:22:41+13:00
- Desc:
- Cleaned up raw data, added documentation + metadata to 1.1 models
- Permanent Source URI:
- http://models.cellml.org/workspace/leloup_goldbeter_1998/rawfile/1e427f23b083dd2e5582148ef7071d77a8c086c5/Stage2.cellml
<?xml version="1.0"?>
<model xmlns="http://www.cellml.org/cellml/1.1#" name="Stage2">
<!-- documentation -->
<documentation xmlns="http://cellml.org/tmp-documentation">
<article>
<articleinfo>
<title>A Model for Circadian Rhythms in Drosophila Incorporating the Formation of a Complex between the PER and TIM Proteins</title>
<author>
<firstname>Mona</firstname>
<surname>Zhu</surname>
<affiliation>
<shortaffil>Auckland Bioengineering Institute, University of Auckland</shortaffil>
</affiliation>
</author>
</articleinfo>
<section id="sec_status">
<title>Model Status</title>
<para>This is an import for the model "leloup_1998a_1.1model.cellml". It is used to define a reoccuring structure within the model and may be used for multiple equations in the model. This file is known to run only in OpenCell in conjunction with the base file.</para>
</section>
</article>
</documentation>
<!-- units -->
<units name="hour">
<unit multiplier="3600" units="second"/>
</units>
<units name="per_hour">
<unit exponent="-1" units="hour"/>
</units>
<units name="per_litre">
<unit exponent="-1" units="litre"/>
</units>
<units name="nanomolar">
<unit prefix="nano" units="mole"/>
<unit units="per_litre"/>
</units>
<units name="nanomolar_hour">
<unit units="nanomolar"/>
<unit units="per_hour"/>
</units>
<units name="per_nanomolar_hour">
<unit exponent="-1" units="nanomolar"/>
<unit units="per_hour"/>
</units>
<!-- components -->
<component name="interface">
<variable name="Y_1" public_interface="in" units="nanomolar"/>
<variable initial_value="Y_2init" name="Y_2" public_interface="out" units="nanomolar"/>
<variable name="time" public_interface="in" units="hour"/>
<variable name="V_3" public_interface="in" units="nanomolar_hour"/>
<variable name="V_4" public_interface="in" units="nanomolar_hour"/>
<variable name="K_3" public_interface="in" units="nanomolar"/>
<variable name="K_4" public_interface="in" units="nanomolar"/>
<variable name="K_d" public_interface="in" units="nanomolar"/>
<variable name="k_3" public_interface="in" units="per_nanomolar_hour"/>
<variable name="k_4" public_interface="in" units="per_hour"/>
<variable name="k_d" public_interface="in" units="per_hour"/>
<variable name="Z_2" public_interface="in" units="nanomolar"/>
<variable name="C" public_interface="in" units="nanomolar"/>
<variable name="v_d" public_interface="in" units="nanomolar_hour"/>
<variable name="Y_2init" public_interface="in" units="nanomolar"/>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>time</ci>
</bvar>
<ci>Y_2</ci>
</apply>
<apply>
<minus/>
<apply>
<minus/>
<apply>
<plus/>
<apply>
<minus/>
<apply>
<minus/>
<apply>
<times/>
<ci>V_3</ci>
<apply>
<divide/>
<ci>Y_1</ci>
<apply>
<plus/>
<ci>K_3</ci>
<ci>Y_1</ci>
</apply>
</apply>
</apply>
<apply>
<times/>
<ci>V_4</ci>
<apply>
<divide/>
<ci>Y_2</ci>
<apply>
<plus/>
<ci>K_4</ci>
<ci>Y_2</ci>
</apply>
</apply>
</apply>
</apply>
<apply>
<times/>
<ci>k_3</ci>
<ci>Y_2</ci>
<ci>Z_2</ci>
</apply>
</apply>
<apply>
<times/>
<ci>k_4</ci>
<ci>C</ci>
</apply>
</apply>
<apply>
<times/>
<ci>v_d</ci>
<apply>
<divide/>
<ci>Y_2</ci>
<apply>
<plus/>
<ci>K_d</ci>
<ci>Y_2</ci>
</apply>
</apply>
</apply>
</apply>
<apply>
<times/>
<ci>k_d</ci>
<ci>Y_2</ci>
</apply>
</apply>
</apply>
</math>
</component>
<!-- metadata -->
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description rdf:nodeID="n1">
<FN xmlns="http://www.w3.org/2001/vcard-rdf/3.0#" xml:lang="en">Mona Zhu</FN>
</rdf:Description>
<rdf:Description rdf:nodeID="n8">
<creator xmlns="http://purl.org/dc/elements/1.1/"></creator>
<title xmlns="http://purl.org/dc/elements/1.1/" xml:lang="en">A Model for Circadian Rhythms in Drosophila Incorporating the Formation of a Complex between the PER and TIM Proteins</title>
<issued xmlns="http://purl.org/dc/terms/">
<rdf:Description rdf:nodeID="n9"/>
</issued>
<Journal xmlns="http://www.cellml.org/bqs/1.1#">
<rdf:Description rdf:nodeID="n10"/>
</Journal>
<first_page xmlns="http://www.cellml.org/bqs/1.1#" xml:lang="en">70</first_page>
<volume xmlns="http://www.cellml.org/bqs/1.1#" xml:lang="en">13</volume>
<last_page xmlns="http://www.cellml.org/bqs/1.1#" xml:lang="en">87</last_page>
</rdf:Description>
<rdf:Description rdf:nodeID="n10">
<title xmlns="http://purl.org/dc/elements/1.1/" xml:lang="en">Journal of Biological Rhythms</title>
</rdf:Description>
<rdf:Description rdf:nodeID="n11">
<W3CDTF xmlns="http://purl.org/dc/terms/" xml:lang="en">28-12-2010</W3CDTF>
</rdf:Description>
<rdf:Description rdf:nodeID="n18">
<JournalArticle xmlns="http://www.cellml.org/bqs/1.1#">
<rdf:Description rdf:nodeID="n8"/>
</JournalArticle>
<Pubmed_id xmlns="http://www.cellml.org/bqs/1.1#" xml:lang="en">9486845</Pubmed_id>
</rdf:Description>
<rdf:Description rdf:nodeID="n21">
<rdf:value xml:lang="en">xzhu055@aucklanduni.ac.nz</rdf:value>
<rdf:type>
<rdf:Description rdf:about="http://imc.org/vCard/3.0#internet"/>
</rdf:type>
</rdf:Description>
</rdf:RDF>
</model>
