- Author:
- Pulasthi <devnull@localhost>
- Date:
- 2009-10-30 11:57:20+13:00
- Desc:
- Uploading of schematic diagrams
- Permanent Source URI:
- http://models.cellml.org/workspace/marcano_yang_nievesgonzalez_clausen_moore_2009/rawfile/194760a37a563d8b644012ce7c68bbf2dd859f81/Figure2C-decomposition/experiment-isoformF.xml
<?xml version="1.0"?>
<model name="Marcano_et_al_2009_experiment_model"
cmeta:id="isoformF_K"
xmlns="http://www.cellml.org/cellml/1.1#"
xmlns:cellml="http://www.cellml.org/cellml/1.1#"
xmlns:cmeta="http://www.cellml.org/metadata/1.0#"
xmlns:xlink="http://www.w3.org/1999/xlink">
<rdf:RDF
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:cmeta="http://www.cellml.org/metadata/1.0#"
xmlns:bqs="http://www.cellml.org/bqs/1.0#"
xmlns:dc="http://purl.org/dc/elements/1.1/"
xmlns:dcterms="http://purl.org/dc/terms/"
xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#"
xmlns:cs="http://www.cellml.org/metadata/simulation/1.0#"
xmlns:cg="http://www.cellml.org/metadata/graphs/1.0#">
<rdf:Description rdf:about="">
<dc:creator rdf:parseType="Resource">
<vCard:N rdf:parseType="Resource">
<vCard:Family>Terkildsen</vCard:Family>
<vCard:Given>Jonna</vCard:Given>
</vCard:N>
<vCard:EMAIL rdf:parseType="Resource">
<rdf:value>j.terkildsen@auckland.ac.nz</rdf:value>
<rdf:type rdf:resource="http://imc.org/vCard/3.0#internet"/>
</vCard:EMAIL>
<vCard:ORG rdf:parseType="Resource">
<vCard:Orgname>The University of Auckland</vCard:Orgname>
<vCard:Orgunit>Auckland Bioengineering Institute</vCard:Orgunit>
</vCard:ORG>
</dc:creator>
<dcterms:created rdf:parseType="Resource">
<dcterms:W3CDTF>2009-08-24</dcterms:W3CDTF>
</dcterms:created>
<dc:publisher>
Auckland Bioengineering Institute, The University of Auckland
</dc:publisher>
</rdf:Description>
<rdf:Description rdf:about="#isoformF_K">
<cmeta:modification rdf:parseType="Resource">
<rdf:value>
Decomposed the model in order to utilise a common description of the mathematical model while allowing different parameterizations for each of the transported isoforms.
</rdf:value>
<cmeta:modifier rdf:parseType="Resource">
<vCard:FN>David Nickerson</vCard:FN>
</cmeta:modifier>
<dcterms:modified rdf:parseType="Resource">
<dcterms:W3CDTF>2009-08-24</dcterms:W3CDTF>
</dcterms:modified>
</cmeta:modification>
<cs:simulation>
<rdf:Description rdf:ID="simulation">
<cs:multistepMethod>bdf</cs:multistepMethod>
<cs:iterationMethod>newton</cs:iterationMethod>
<cs:linearSolver>dense</cs:linearSolver>
<cs:boundIntervals rdf:parseType="Collection">
<rdf:Description>
<cs:boundVariable>
<rdf:Description rdf:about="environment_model.xml#time"/>
</cs:boundVariable>
<cs:maximumStepSize
rdf:datatype="http://www.w3.org/2001/XMLSchema#double">
0.01
</cs:maximumStepSize>
<cs:tabulationStepSize
rdf:datatype="http://www.w3.org/2001/XMLSchema#double">
0.01
</cs:tabulationStepSize>
<cs:startingValue
rdf:datatype="http://www.w3.org/2001/XMLSchema#double">
0
</cs:startingValue>
<cs:endingValue
rdf:datatype="http://www.w3.org/2001/XMLSchema#double">
1.0
</cs:endingValue>
</rdf:Description>
</cs:boundIntervals>
</rdf:Description>
</cs:simulation>
</rdf:Description>
</rdf:RDF>
<import xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="isoformF.xml">
<component component_ref="parameters" name="parameters"/>
<component component_ref="initial_values" name="initial_values"/>
</import>
<import xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="Marcano_et_al_2009_interface_model.xml">
<component component_ref="Marcano_et_al_2009_interface_component" name="Marcano_et_al_2009_interface_component"/>
</import>
<connection>
<map_components component_1="Marcano_et_al_2009_interface_component" component_2="parameters"/>
<map_variables variable_1="k_on" variable_2="k_on"/>
<map_variables variable_1="k_1" variable_2="k_1"/>
<map_variables variable_1="k_2" variable_2="k_2"/>
<map_variables variable_1="k_3o" variable_2="k_3o"/>
<map_variables variable_1="k_3i" variable_2="k_3i"/>
<map_variables variable_1="k_4" variable_2="k_4"/>
<map_variables variable_1="k_fe" variable_2="k_fe"/>
<map_variables variable_1="k_ff" variable_2="k_ff"/>
<map_variables variable_1="k_bf" variable_2="k_bf"/>
<map_variables variable_1="E_T" variable_2="E_T"/>
<map_variables variable_1="Ce_Na" variable_2="Ce_Na"/>
<map_variables variable_1="Ce_Cl" variable_2="Ce_Cl"/>
<map_variables variable_1="Ci_Na" variable_2="Ci_Na"/>
<map_variables variable_1="Ci_K" variable_2="Ci_K"/>
<map_variables variable_1="Ci_Cl" variable_2="Ci_Cl"/>
</connection>
<connection>
<map_components component_1="Marcano_et_al_2009_interface_component" component_2="initial_values"/>
<map_variables variable_1="Ce_K_initial" variable_2="Ce_K_initial"/>
<map_variables variable_1="E_0_initial" variable_2="E_0_initial"/>
<map_variables variable_1="E_1_initial" variable_2="E_1_initial"/>
<map_variables variable_1="E_2_initial" variable_2="E_2_initial"/>
<map_variables variable_1="E_3_initial" variable_2="E_3_initial"/>
<map_variables variable_1="E_4_initial" variable_2="E_4_initial"/>
<map_variables variable_1="E_5_initial" variable_2="E_5_initial"/>
<map_variables variable_1="E_6_initial" variable_2="E_6_initial"/>
<map_variables variable_1="E_7_initial" variable_2="E_7_initial"/>
<map_variables variable_1="E_8_initial" variable_2="E_8_initial"/>
<map_variables variable_1="E_9_temp_initial" variable_2="E_9_temp_initial"/>
</connection>
</model>
