Location: Metabolic Component Library @ af10084679bb / components.html
- Author:
- Matthias K?nig <matthias.koenig@charite.de>
- Date:
- 2013-04-09 15:08:59+02:00
- Desc:
- Documentation of Reaction Mechanism. Images for basic mechanisms created.
- Permanent Source URI:
- https://models.cellml.org/w/matthiaskoenig/MetabolicComponentLibrary/rawfile/af10084679bb928d763a8ff441ed93d41aa59126/components.html
Metabolic Component Library for CellML
Matthias Koenig [1] & Randall Britten [2][1] Charite Berlin, matthias.koenig@charite.de
[2] Auckland Bioengineering Institute
Implementation of standardized reaction kinetics in CellML for reuse in metabolic models. The library covers the metabolic function definitions for processes from COPASI 4.8 (Bulid 35).
Naming Conventions
Substrate is named S (S1, S2, ... in case of multiple substrates)Products is named P (P1, P2, ... in case of multiple productes)
Inhibitor is named I (I1, I2, ...)
Activator is named A (A1, A2, ...)
Modifier is named M (M1, M2, ...)
Km values are subscripted with the respective substrates or products (P -> Km_P, S -> Km_S, P1 -> Km_P1, ...)
Analog convention for inhibition constants Ki and activation constants Ka.
Units
Time: secondVolume Unit: liter
Quantity Unit: mmol
Components
AllostericInhibitionEmpirical
CellML
UniUniRev_I
AllostericInhibitionMWC
CellML
UniUniIrrev_I
UniBiIrrev_I
UniNullIrrev_I
BiIrrev
CellML
BiNullIrrev
BiBiIrrev
BiUniIrrev
CatalyticActivationIrrev
CellML
UniUniIrrev_A
UniBiIrrev_A
UniNullIrrev_A
CatalyticActivationRev
CellML
UniUniRev_A
CompetitiveInhibitionIrrev
CellML
UniUniIrrev_I
UniBiIrrev_I
UniNullIrrev_I
CompetitiveInhibitionRev
CellML
UniUniRev_I
ConstantFluxIrrev
CellML
UniNullIrrev
UniUniIrrev
UniBiIrrev
BiBiIrrev
BiUniIrrev
Hill1ModifierRev
CellML
UniUniRev_M
Hill2ModifierRev
CellML
UniUniRev_M2
HillIrrev
CellML
UniNullIrrev
UniUniIrrev
UniBiIrrev
HillRev
CellML
UniUniRev
HyperbolicModifierIrrev
CellML
UniNullIrrev_M
UniUniIrrev_M
UniBiIrrev_M
HyperbolicModifierRev
CellML
UniUniRev_M
IsoUniUni
CellML
UniUniRev
MassActionBiBiRev
CellML
BiBiRev
MassActionBiIrrev
CellML
BiNullIrrev
BiBiIrrev
BiUniIrrev
MassActionBiUniRev
CellML
BiUniRev
MassActionUniBiRev
CellML
UniBiRev
MassActionUniIrrev
CellML
UniNullIrrev
UniUniIrrev
UniBiIrrev
MassActionUniUniRev
CellML
UniUniRev
MichaelisMentenIrrev
CellML
UniNullIrrev
UniUniIrrev
UniBiIrrev
MichaelisMentenRev
CellML
UniUniRev
MixedActivationIrrev
CellML
UniUniIrrev_A
UniBiIrrev_A
UniNullIrrev_A
MixedActivationRev
CellML
UniUniRev_A
MixedInhibitionIrrev
CellML
UniUniIrrev_I
UniBiIrrev_I
UniNullIrrev_I
MixedInhibitionRev
CellML
UniUniRev_I
NoncompetitiveInhibitionIrrev
CellML
UniUniIrrev_I
UniBiIrrev_I
UniNullIrrev_I
NoncompetitiveInhibitionRev
CellML
UniUniRev_I
OrderedBiBi
CellML
BiBiRev
OrderedBiUni
CellML
BiUniRev
OrderedUniBi
CellML
UniBiRev
PingPongBiBi
CellML
BiBiRev
SpecificActivationIrrev
CellML
UniUniIrrev_A
UniBiIrrev_A
UniNullIrrev_A
SpecificActivationRev
CellML
UniUniRev_A
SubstrateActivationIrrev
CellML
UniNullIrrev
UniUniIrrev
UniBiIrrev
SubstrateInhibitionIrrev
CellML
UniNullIrrev
UniUniIrrev
UniBiIrrev
SubstrateInhibitionRev
CellML
UniUniRev
UncompetitiveInhibitionIrrev
CellML
UniUniIrrev_I
UniBiIrrev_I
UniNullIrrev_I