Model Mathematics

Component: environment

Component: v_c

ddtimev_c=dv_c_dt

Component: dv_c_dt

dv_c_dt=k_growthv_c

Component: v_n

ddtimev_n=0

Component: k_volume

k_volume=v_nv_c

Component: mcln2_c

ddtimemcln2_c=k_50mcln2_nk_volume-k_10mcln2_c-dv_c_dtv_cmcln2_c

Component: mclb5_c

ddtimemclb5_c=k_51mclb5_nk_volume-k_11mclb5_c-dv_c_dtv_cmclb5_c

Component: mcln2_n

ddtimemcln2_n=k_1sbf_n-k_50mcln2_n

Component: mclb5_n

ddtimemclb5_n=k_2sbf_n-k_51mclb5_n

Component: sbf_n

ddtimesbf_n=k_39sbfwhi5p_n-k_34sbf_nwhi5_n+k_35sbfwhi5_n

Component: cln3_c

ddtimecln3_c=k_6-k_43cln3_c-k_15cln3_c-dv_c_dtv_ccln3_c

Component: cln2_c

ddtimecln2_c=k_3mcln2_c-k_26cdk1_ccln2_c+k_27cdk1cln2_c-k_12cln2_c-dv_c_dtv_ccln2_c

Component: clb5_c

ddtimeclb5_c=k_4mclb5_c-k_28clb5_ccdk1_c+k_29cdk1clb5_c-k_13clb5_c-dv_c_dtv_cclb5_c

Component: cdk1_c

ddtimecdk1_c=k_7-k_44cdk1_c+k_49cdk1_n+k_27cdk1cln2_c-k_26cdk1_ccln2_c-k_28cdk1_cclb5_c+k_29cdk1clb5_c-k_16cdk1_c-dv_c_dtv_ccdk1_c

Component: cln3_n

ddtimecln3_n=k_43cln3_ck_volume-k_24cln3_ncdk1_n+k_25cdk1cln3_n-k_20cln3_n

Component: cdk1_n

ddtimecdk1_n=k_44cdk1_ck_volume-k_49cdk1_n-k_24cln3_ncdk1_n+k_25cdk1cln3_n-k_21cdk1_n

Component: cdk1cln2_c

ddtimecdk1cln2_c=k_26cdk1_ccln2_c-k_27cdk1cln2_c-k_46cdk1cln2_c+k_53cdk1cln2_nk_volume-dv_c_dtv_ccdk1cln2_c

Component: cdk1clb5_c

ddtimecdk1clb5_c=k_28cdk1_cclb5_c-k_29cdk1clb5_c+k_33cdk1clb5sic1_c-k_32sic1_ccdk1clb5_c-k_48cdk1clb5_c-dv_c_dtv_ccdk1clb5_c

Component: cdk1cln2_n

ddtimecdk1cln2_n=k_46cdk1cln2_ck_volume-k_53cdk1cln2_n

Component: cdk1clb5_n

ddtimecdk1clb5_n=k_41cdk1clb5sic1p_n+k_48cdk1clb5_ck_volume

Component: cdk1cln3_n

ddtimecdk1cln3_n=k_24cln3_ncdk1_n-k_25cdk1cln3_n+k_31cdk1cln3far1_n-k_30far1_ncdk1cln3_n+k_40cdk1cln3far1p_n

Component: sbfwhi5_n

ddtimesbfwhi5_n=k_34sbf_nwhi5_n-k_35sbfwhi5_n-k_36sbfwhi5_ncdk1cln3_n

Component: sbfwhi5p_n

ddtimesbfwhi5p_n=k_36sbfwhi5_ncdk1cln3_n-k_39sbfwhi5p_n

Component: cdk1cln3far1_n

ddtimecdk1cln3far1_n=k_30far1_ncdk1cln3_n-k_31cdk1cln3far1_n-k_37cdk1cln3far1_ncdk1cln2_n

Component: cdk1clb5sic1_n

ddtimecdk1clb5sic1_n=k_47cdk1clb5sic1_ck_volume-k_38cdk1clb5sic1_ncdk1cln2_n

Component: cdk1clb5sic1p_n

ddtimecdk1clb5sic1p_n=k_38cdk1clb5sic1_ncdk1cln2_n-k_41cdk1clb5sic1p_n

Component: cdk1cln3far1p_n

ddtimecdk1cln3far1p_n=k_37cdk1cln3far1_ncdk1cln2_n-k_40cdk1cln3far1p_n

Component: cdk1clb5sic1_c

ddtimecdk1clb5sic1_c=k_32sic1_ccdk1clb5_c-k_33cdk1clb5sic1_c-k_47cdk1clb5sic1_c-dv_c_dtv_ccdk1clb5sic1_c

Component: sic1_c

ddtimesic1_c=k_9-k_32sic1_ccdk1clb5_c+k_33cdk1clb5sic1_c-k_18sic1_c-dv_c_dtv_csic1_c

Component: whi5_c

ddtimewhi5_c=k_8-k_45whi5_c-k_17whi5_c-dv_c_dtv_cwhi5_c

Component: far1_c

ddtimefar1_c=k_5-k_42far1_c-k_14far1_c-dv_c_dtv_cfar1_c

Component: whi5p_c

ddtimewhi5p_c=k_52whi5p_nk_volume

Component: sic1P_n

ddtimesic1P_n=k_41cdk1clb5sic1p_n

Component: far1P_n

ddtimefar1P_n=k_40cdk1cln3far1p_n

Component: whi5_n

ddtimewhi5_n=k_45whi5_ck_volume-k_34whi5_nsbf_n-k_22whi5_n

Component: far1_n

ddtimefar1_n=k_42far1_ck_volume-k_30far1_ncdk1cln3_n+k_31cdk1cln3far1_n-k_19far1_n

Component: whi5p_n

ddtimewhi5p_n=k_39sbfwhi5p_n-k_52whi5p_n-k_23whi5p_n

Component: rate_constants

Source
Derived from workspace Barberis, Klipp, Vanoni, Alberghina, 2007 at changeset ede13a96066e.
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