Model Mathematics

Component: environment

Component: membrane

dd time V =- i_Ca + i_K + i_K_Ca + i_K_ATP Cm

Component: delayed_rectifier_potassium_current

i_K = g_K n V - V_K

Component: delayed_rectifier_potassium_current_n_gate

dd time n = n_infinity - n tau_n n_infinity = 1.0 1.0 +- 16.0 + V 5.0

Component: calcium_current

i_Ca = g_Ca m_infinity V - V_Ca

Component: calcium_current_m_gate

m_infinity = 1.0 1.0 +- 20.0 + V 12.0

Component: calcium_dependent_potassium_current

i_K_Ca = g_K_Ca V - V_K g_K_Ca = g_K_Ca_ Ca 5.0 kD 5.0 + Ca 5.0

Component: nucleotide_sensitive_potassium_current

i_K_ATP = g_K_ATP V - V_K g_K_ATP = g_K_ATP_ O_infinity_ADP_ATP MgADP = 0.165 ADP ADP3 = 0.135 ADP ATP4 = 0.05 ATP O_infinity_ADP_ATP = 0.08 1.0 + 2.0 MgADP 17.0 + 0.89 MgADP 17.0 2.0 1.0 + MgADP 17.0 2.0 1.0 + ADP3 26.0 + ATP4 1.0

Component: cytosolic_free_calcium_concentration

dd time Ca = fcyt Jmem + Jer

Component: calcium_flux_through_the_membrane

Jmem =- alpha i_Ca + kPMCA Ca

Component: net_calcium_efflux_out_of_the_ER

Jer = Jleak - J_SERCA

Component: calcium_leak_out_of_the_ER

Jleak = pleak Ca_er - Ca

Component: calcium_influx_into_the_ER

J_SERCA = kSERCA Ca

Component: ER_calcium_concentration

dd time Ca_er =- fer Vcyt_Ver Jer

Component: glycolysis

dd time G6P = lamda R_GK - R_PFK dd time FBP = lamda R_PFK - 0.5 R_GPDH F6P = 0.3 G6P R_GPDH = 0.2 FBP 1.0 0.5 R_PFK = Vmax W11100 + lamda1 sum_state fraction_state - W11100 sum_state fraction_state fraction_state = 1.0 f13 alpha gamma f23 beta gamma f41 delta alpha f42 delta beta f43 delta gamma f53 epsilon gamma AMP alpha K1 alpha FBP beta K2 beta F6P 2.0 gamma K3 gamma ATP delta K4 delta ATP epsilon K5 epsilon W00000

Component: adenine_nucleotides

dd time ADP = ATP - ADP r + gamma 1.0 - Ca r1 tau_a AMP = ADP 2.0 ATP ATP = A_tot - ADP + AMP gamma = v_gamma R_GPDH k_gamma + R_GPDH