Model Mathematics

Component based math viewer is available

Component: SpeciesInitialConcentrations

Component: RNA_Device1_interface

JGain = JPlusProduction - JMinusDegradation

Component: TF_interface

JGain = JPlusProductionDevice1 - JMinusDegradation - JMinusTFSFormation

Component: S

Component: TFS_interface

JGain = JPlusProduction - JMinusDegradation

Component: RNA_Device2_interface

JGain = JPlusProduction - JMinusDegradation

Component: PhzM_interface

JGain = JPlusProduction - JMinusDegradation

Component: PCA

Component: IC_interface

JGain = JPlusProduction - JMinusDegradation - JMinusPYOFormation

Component: PhzS_interface

JGain = JPlusProduction - JMinusDegradation

Component: PYO_interface

JGain = JPlusProduction - JMinusDegradation

Component: Chassis_EColi

Component: WellStirredBag

Component: Time

Component: ElectrEcoBluDevice1_Promoter

Component: Template_Promoter_Constitutive

JRNA = \frac{k 1e9}{localVolume (1e-15) avogadrosConstant}

Component: Template_Species

\frac{d}{d time} (concentration) = JGain

Component: Bioenvironment_Degradation_ElectrEcoBluDevice1RNA

Component: Template_RxR1P1

J = k concentration

Component: ElectrEcoBluDevice1_RBS

Component: Template_RBS

RNARiPs = 1e9 k RNA localVolume (1e-15)

Component: ElectrEcoBluDevice1_ProteinCDS_TF

Component: Template_ProteinCDS

J = \frac{1e6 hostRNARiPs}{localVolume}

Component: Template_Species

\frac{d}{d time} (concentration) = JGain

Component: Bioenvironment_Degradation_TF

Component: Template_RxR1P1

J = k concentration

Component: Bioenvironment_RxR2P1Rev_TFSFormation

Component: Template_RxR2P1Rev

J = reactant1 reactant2 kf - (kb product)

Component: Template_Species

\frac{d}{d time} (concentration) = JGain

Component: Bioenvironment_Degradation_TFS

Component: Template_RxR1P1

J = k concentration

Component: ElectrEcoBluDevice2_Promoter

Component: Template_Promoter_Inductive

JRNA = \frac{\frac{k {tFactor}^{n}}{{Km}^{n} + {tFactor}^{n}} 1e9}{localVolume (1e-15) avogadrosConstant}

Component: Template_Species

\frac{d}{d time} (concentration) = JGain

Component: Bioenvironment_Degradation_ElectrEcoBluDevice2RNA

Component: Template_RxR1P1

J = k concentration

Component: ElectrEcoBluDevice2_RBS_PhzM

Component: Template_RBS

RNARiPs = 1e9 k RNA localVolume (1e-15)

Component: ElectrEcoBluDevice2_ProteinCDS_PhzM

Component: Template_ProteinCDS

J = \frac{1e6 hostRNARiPs}{localVolume}

Component: ElectrEcoBluDevice2_RBS_PhzS

Component: Template_RBS

RNARiPs = 1e9 k RNA localVolume (1e-15)

Component: ElectrEcoBluDevice2_ProteinCDS_PhzS

Component: Template_ProteinCDS

J = \frac{1e6 hostRNARiPs}{localVolume}

Component: Template_Species

\frac{d}{d time} (concentration) = JGain

Component: Bioenvironment_Degradation_PhzM

Component: Template_RxR1P1

J = k concentration

Component: Bioenvironment_RxR1P1MM_ICFormation

Component: Template_RxR1P1MM

J = \frac{k catalyst reactant}{reactant + Km}

Component: Template_Species

\frac{d}{d time} (concentration) = JGain

Component: Bioenvironment_Degradation_IC

Component: Template_RxR1P1

J = k concentration

Component: Template_Species

\frac{d}{d time} (concentration) = JGain

Component: Bioenvironment_Degradation_PhzS

Component: Template_RxR1P1

J = k concentration

Component: Bioenvironment_RxR1P1MM_PYOFormation

Component: Template_RxR1P1MM

J = \frac{k catalyst reactant}{reactant + Km}

Component: Template_Species

\frac{d}{d time} (concentration) = JGain

Component: Bioenvironment_Degradation_PYO

Component: Template_RxR1P1

J = k concentration