| 2015-02-12 |
Tommy Yu |
Merging to remove the extra head
- Since the title is changed and in the interest of maintaining the
current structure we keep it as is.
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| 2013-05-17 |
Matthias K?nig |
Further work on the HTML documentation.
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| 2013-05-17 |
Matthias K?nig |
Work on the automatic HTML rendering.
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| 2013-05-17 |
Matthias K?nig |
HTML Documentation updated.
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| 2013-05-15 |
Matthias K?nig |
Some work on tutorial.
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| 2013-04-21 |
Matthias K?nig |
wolf_heinrich_2000 SBGN overview added
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| 2013-04-21 |
Matthias K?nig |
Nazaret 2009 example implemented and integratable.
Results between normal and MCL implementation not identical ! Problems with original model implementation (no steady state)!
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| 2013-04-19 |
Matthias K?nig |
Merge
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| 2013-04-19 |
Matthias K?nig |
Working on Koenig 2012 Glucose Metabolism Example.
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| 2013-04-19 |
Randall Britten |
Removed duplicate cmeta:id attribute that was causing an XML error, and changed metadata to use the more human readable ID.
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| 2013-04-18 |
Matthias K?nig |
Wolf Heinrich Example implemented and working !
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| 2013-04-18 |
Matthias K?nig |
Example Full 1 working!
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| 2013-04-18 |
Matthias K?nig |
Changes in Ingegrator and file hierarchy.
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| 2013-04-18 |
Matthias K?nig |
Merge Example 2 changes.
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| 2013-04-18 |
Matthias K?nig |
Changes in Ingegrator and file hierarchy.
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| 2013-04-17 |
Randall Britten |
Trivial whitespace changes, and moved import to be adjacent to peer import.
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| 2013-04-17 |
Randall Britten |
To "clone" an imported component, the top level import element needs to be duplicated, not just the component reference within an existing import. The rationale is that all connections within a top-level import are kept intact, as dictated by the encapsulation in the imported model.
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| 2013-04-16 |
Matthias K?nig |
CellML Java API source code first commit.
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| 2013-04-15 |
Matthias K?nig |
Project summary updated and first manuscript draft for CellML-MCL.
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| 2013-04-12 |
Matthias K?nig |
Components definition Excel added.
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| 2013-04-12 |
Matthias K?nig |
Example reaction mechanisms in SBGN updated.
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| 2013-04-12 |
Matthias K?nig |
Example files with documentation generated.
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| 2013-04-12 |
Matthias K?nig |
OpenCell output of Mass Action examples 1 & 3.
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| 2013-04-12 |
Matthias K?nig |
Example 3 Mass Action working.
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| 2013-04-12 |
Matthias K?nig |
Second mass action example A <-> B <-> C.
Not working due to sharing of B ?
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| 2013-04-12 |
Matthias K?nig |
First working example using the library components !
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| 2013-04-12 |
Matthias K?nig |
Some smaller updates in the documentation. Not critical.
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| 2013-04-12 |
Matthias K?nig |
Compact library for import generated.
Components and Units are collected from the individual LibraryModelComponents.
This is the file imported and should be kept locally with the used model.
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| 2013-04-10 |
Matthias K?nig |
Proper encapsulation of all the example files with separation into network/reaction/librarycomponent structure.
Some smaller bugfixes in mapping between components.
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| 2013-04-09 |
Matthias K?nig |
Naming error fixed in HillIrrev.
Components documentation updated:
- Variables of Components parsed
- CellML library components validated with cellml-API
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| 2013-04-09 |
Matthias K?nig |
Documentation of Reaction Mechanism.
Images for basic mechanisms created.
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| 2013-04-05 |
Matthias K?nig |
Reaction Mechanisms in SBGN created.
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| 2013-04-04 |
Matthias K?nig |
Minor bugs in naming conventions removed.
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| 2013-04-04 |
Matthias K?nig |
Formula images created.
Minor bugs in naming conventions removed.
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| 2013-03-27 |
Tommy Yu |
Fixed case and only the title is needed.
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Library of metabolic components in CellML |
| 2013-03-27 |
Tommy Yu |
Need title tag.
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| 2013-03-26 |
Matthias K?nig |
<br /> tags where appropriate.
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| 2013-03-26 |
Matthias K?nig |
</br> replaced with <p></p> due to missing support of </br> element.
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| 2013-03-26 |
Matthias K?nig |
CellML files changed from CellML v1.0 -> v1.1 to support import of the components.
Additional header added to CellML files for metabolic component library.
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| 2013-03-26 |
Matthias K?nig |
Documentation moved to the HTML document from the README.
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| 2013-03-26 |
Matthias K?nig |
First draft of a library documentation.
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| 2013-03-26 |
Matthias K?nig |
Link to a model.
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| 2013-03-26 |
Matthias K?nig |
Created Test HTML page for Exposure.
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| 2013-03-26 |
Matthias K?nig |
Folder structure rearranged. Moving of library components to library.
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| 2013-03-25 |
Matthias K?nig |
Changing of folder structure to distinguish between references, examples, the actual component library and documentation.
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| 2013-03-25 |
Matthias K?nig |
Initial commit.
COPASI 4.8 (Build 35) kinetic equations with test cases implemented.
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