Location: Metabolic Component Library @ a0b670aa4a20 / library / OrderedUniBi.cellml

Author:
Tommy Yu <tommy.yu@auckland.ac.nz>
Date:
2013-03-27 15:29:53+13:00
Desc:
Fixed case and only the title is needed.
Permanent Source URI:
http://models.cellml.org/w/matthiaskoenig/MetabolicComponentLibrary/rawfile/a0b670aa4a2052484c3e0fa36417853b2e3b5d89/library/OrderedUniBi.cellml

<?xml version="1.0" encoding="utf-8"?>
<!--
This CellML file was generated on 3/25/2013 at 12:07:59 at PM using:

COR (0.9.31.1409)
Copyright 2002-2013 Dr Alan Garny
http://cor.physiol.ox.ac.uk/ - cor@physiol.ox.ac.uk

Metabolic Component Library for CellML
Matthias Koenig (matthias.koenig@charite.de)
-->
<model name="OrderedUniBi" cmeta:id="OrderedUniBi" xmlns="http://www.cellml.org/cellml/1.1#" xmlns:cellml="http://www.cellml.org/cellml/1.1#" xmlns:cmeta="http://www.cellml.org/metadata/1.1#">
   <units name="mM">
      <unit units="mole" prefix="milli"/>
      <unit units="liter" exponent="-1"/>
   </units>
   <units name="per_mM">
      <unit units="mM" exponent="-1"/>
   </units>
   <units name="per_second">
      <unit units="second" exponent="-1"/>
   </units>
   <units name="mM_per_second">
      <unit units="mM"/>
      <unit units="second" exponent="-1"/>
   </units>
   <component name="Test">
      <variable name="t" units="second"/>
      <variable name="J" units="mM_per_second" public_interface="in"/>
      <variable name="S" units="mM" initial_value="1" public_interface="out"/>
      <variable name="P1" units="mM" initial_value="1" public_interface="out"/>
      <variable name="P2" units="mM" initial_value="0" public_interface="out"/>
      <variable name="V_f" units="mM_per_second" public_interface="out"/>
      <variable name="V_b" units="mM_per_second" public_interface="out"/>
      <variable name="Keq" units="mM" public_interface="out"/>
      <variable name="Km_S" units="mM" public_interface="out"/>
      <variable name="Km_P1" units="mM" public_interface="out"/>
      <variable name="Km_P2" units="mM" public_interface="out"/>
      <variable name="Ki_P1" units="mM" public_interface="out"/>
      <math xmlns="http://www.w3.org/1998/Math/MathML">
         <apply>
            <eq/>
            <ci>V_f</ci>
            <cn cellml:units="mM_per_second">10</cn>
         </apply>
         <apply>
            <eq/>
            <ci>V_b</ci>
            <cn cellml:units="mM_per_second">3</cn>
         </apply>
         <apply>
            <eq/>
            <ci>Keq</ci>
            <cn cellml:units="mM">0.2</cn>
         </apply>
         <apply>
            <eq/>
            <ci>Km_S</ci>
            <cn cellml:units="mM">0.1</cn>
         </apply>
         <apply>
            <eq/>
            <ci>Km_P1</ci>
            <cn cellml:units="mM">0.5</cn>
         </apply>
         <apply>
            <eq/>
            <ci>Km_P2</ci>
            <cn cellml:units="mM">0.1</cn>
         </apply>
         <apply>
            <eq/>
            <ci>Ki_P1</ci>
            <cn cellml:units="mM">0.5</cn>
         </apply>
         <apply>
            <eq/>
            <apply>
               <diff/>
               <bvar>
                  <ci>t</ci>
               </bvar>
               <ci>S</ci>
            </apply>
            <apply>
               <minus/>
               <ci>J</ci>
            </apply>
         </apply>
         <apply>
            <eq/>
            <apply>
               <diff/>
               <bvar>
                  <ci>t</ci>
               </bvar>
               <ci>P1</ci>
            </apply>
            <ci>J</ci>
         </apply>
         <apply>
            <eq/>
            <apply>
               <diff/>
               <bvar>
                  <ci>t</ci>
               </bvar>
               <ci>P2</ci>
            </apply>
            <ci>J</ci>
         </apply>
      </math>
   </component>
   <component name="OrderedUniBi">
      <variable name="J" units="mM_per_second" public_interface="out"/>
      <variable name="S" units="mM" public_interface="in"/>
      <variable name="P1" units="mM" public_interface="in"/>
      <variable name="P2" units="mM" public_interface="in"/>
      <variable name="V_f" units="mM_per_second" public_interface="in"/>
      <variable name="V_b" units="mM_per_second" public_interface="in"/>
      <variable name="Keq" units="mM" public_interface="in"/>
      <variable name="Km_S" units="mM" public_interface="in"/>
      <variable name="Km_P1" units="mM" public_interface="in"/>
      <variable name="Km_P2" units="mM" public_interface="in"/>
      <variable name="Ki_P1" units="mM" public_interface="in"/>
      <math xmlns="http://www.w3.org/1998/Math/MathML">
         <apply>
            <eq/>
            <ci>J</ci>
            <apply>
               <divide/>
               <apply>
                  <times/>
                  <ci>V_f</ci>
                  <apply>
                     <minus/>
                     <ci>S</ci>
                     <apply>
                        <divide/>
                        <apply>
                           <times/>
                           <ci>P1</ci>
                           <ci>P2</ci>
                        </apply>
                        <ci>Keq</ci>
                     </apply>
                  </apply>
               </apply>
               <apply>
                  <plus/>
                  <ci>Km_S</ci>
                  <apply>
                     <times/>
                     <ci>S</ci>
                     <apply>
                        <plus/>
                        <cn cellml:units="dimensionless">1</cn>
                        <apply>
                           <divide/>
                           <ci>P1</ci>
                           <ci>Ki_P1</ci>
                        </apply>
                     </apply>
                  </apply>
                  <apply>
                     <times/>
                     <apply>
                        <divide/>
                        <ci>V_f</ci>
                        <apply>
                           <times/>
                           <ci>V_b</ci>
                           <ci>Keq</ci>
                        </apply>
                     </apply>
                     <apply>
                        <plus/>
                        <apply>
                           <times/>
                           <ci>Km_P2</ci>
                           <ci>P1</ci>
                        </apply>
                        <apply>
                           <times/>
                           <ci>Km_P1</ci>
                           <ci>P2</ci>
                        </apply>
                        <apply>
                           <times/>
                           <ci>P1</ci>
                           <ci>P2</ci>
                        </apply>
                     </apply>
                  </apply>
               </apply>
            </apply>
         </apply>
      </math>
   </component>
   <connection>
      <map_components component_1="Test" component_2="OrderedUniBi"/>
      <map_variables variable_1="J" variable_2="J"/>
      <map_variables variable_1="S" variable_2="S"/>
      <map_variables variable_1="P1" variable_2="P1"/>
      <map_variables variable_1="P2" variable_2="P2"/>
      <map_variables variable_1="V_f" variable_2="V_f"/>
      <map_variables variable_1="V_b" variable_2="V_b"/>
      <map_variables variable_1="Keq" variable_2="Keq"/>
      <map_variables variable_1="Km_S" variable_2="Km_S"/>
      <map_variables variable_1="Km_P1" variable_2="Km_P1"/>
      <map_variables variable_1="Km_P2" variable_2="Km_P2"/>
      <map_variables variable_1="Ki_P1" variable_2="Ki_P1"/>
   </connection>
</model>