Location: Metabolic Component Library @ e0e2c28e2dfd / html / MetabolicComponentLibrary.html
- Author:
- Tommy Yu <tommy.yu@auckland.ac.nz>
- Date:
- 2015-02-12 19:28:32+13:00
- Desc:
- Merging to remove the extra head - Since the title is changed and in the interest of maintaining the current structure we keep it as is.
- Permanent Source URI:
- http://models.cellml.org/w/matthiaskoenig/MetabolicComponentLibrary/rawfile/e0e2c28e2dfdfe37ea2cae3390a6ae26c28a3393/html/MetabolicComponentLibrary.html
Metabolic Component Library(MCL)
We present the Metabolic Component Library (MCL), an open-source library for the modelling of metabolic components and metabolic networks in CellML. | |
Key features are
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MCL was developed by Matthias König at the Charité Berlin with support from Randall Britten from the Auckland Bioengineering Institute and Maxwell Neal from the University of Washington. |
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Annotation of the metabolic components to biological ontologies was performed with SemGen developed by Dr. Maxwell Neal at the University of Washington. |
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The project was funded by the Virtual Liver Network (VLN). | |
Please try and report any questions or problems to
matthias.koenig[AT]charite.de Thanks and have fun The MCL team. |
Components
Substrate(s) : S (S1, S2, ...)Product(s) : P (P1, P2, ... )
Inhibitor(s) : I (I1, I2, ...)
Activator(s) : A (A1, A2, ...)
Modifier(s) : M (M1, M2, ...)
AllostericInhibitionEmpirical
(Validation Errors: 0) J [mM_per_second] S [mM] P [mM] I [mM] V_f [mM_per_second] V_b [mM_per_second] Km_S [mM] Km_P [mM] n [dimensionless] Ki [mM] |
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Mechanisms UniUniRev_I |
AllostericInhibitionMWC
(Validation Errors: 1) J [mM_per_second] S [mM] I [mM] V [mM_per_second] Km_S [mM] n [dimensionless] L [dimensionless] Ki [mM] |
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Mechanisms UniUniIrrev_I UniBiIrrev_I UniNullIrrev_I |
BiIrrev
(Validation Errors: 0) J [mM_per_second] S1 [mM] S2 [mM] V [mM_per_second] Km_S1 [mM] Km_S2 [mM] |
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Mechanisms BiNullIrrev BiBiIrrev BiUniIrrev |
CatalyticActivationIrrev
(Validation Errors: 0) J [mM_per_second] S [mM] A [mM] V [mM_per_second] Km_S [mM] Km_A [mM] |
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Mechanisms UniUniIrrev_A UniBiIrrev_A UniNullIrrev_A |
CatalyticActivationRev
(Validation Errors: 0) J [mM_per_second] S [mM] P [mM] A [mM] V_f [mM_per_second] V_b [mM_per_second] Km_S [mM] Km_P [mM] Km_A [mM] |
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Mechanisms UniUniRev_A |
CompetitiveInhibitionIrrev
(Validation Errors: 0) J [mM_per_second] S [mM] I [mM] V [mM_per_second] Km_S [mM] Ki [mM] |
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Mechanisms UniUniIrrev_I UniBiIrrev_I UniNullIrrev_I |
CompetitiveInhibitionRev
(Validation Errors: 0) J [mM_per_second] S [mM] P [mM] V_f [mM_per_second] V_b [mM_per_second] I [mM] Km_S [mM] Km_P [mM] Ki [mM] |
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Mechanisms UniUniRev_I |
ConstantFluxIrrev
(Validation Errors: 0) J [mM_per_second] V [mM_per_second] |
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Mechanisms UniNullIrrev UniUniIrrev UniBiIrrev BiBiIrrev BiUniIrrev |
Hill1ModifierRev
(Validation Errors: 0) J [mM_per_second] S [mM] P [mM] M [mM] V [mM_per_second] Keq [dimensionless] Km_S [mM] Km_P [mM] Km_M [mM] a [dimensionless] h [dimensionless] |
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Mechanisms UniUniRev_M |
Hill2ModifierRev
HillIrrev
(Validation Errors: 1) J [mM_per_second] S [mM] V [mM_per_second] Km_S [mM] n [dimensionless] |
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Mechanisms UniNullIrrev UniUniIrrev UniBiIrrev |
HillRev
(Validation Errors: 0) J [mM_per_second] S [mM] P [mM] V [mM_per_second] Keq [dimensionless] Km_S [mM] Km_P [mM] h [dimensionless] |
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Mechanisms UniUniRev |
HyperbolicModifierIrrev
(Validation Errors: 0) J [mM_per_second] S [mM] M [mM] V [mM_per_second] Kd [mM] Km_S [mM] a [dimensionless] b [dimensionless] |
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Mechanisms UniNullIrrev_M UniUniIrrev_M UniBiIrrev_M |
HyperbolicModifierRev
(Validation Errors: 0) J [mM_per_second] S [mM] P [mM] M [mM] V_f [mM_per_second] V_b [mM_per_second] Kd [mM] Km_S [mM] Km_P [mM] a [dimensionless] b [dimensionless] |
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Mechanisms UniUniRev_M |
IsoUniUni
(Validation Errors: 0) J [mM_per_second] S [mM] P [mM] V [mM_per_second] Keq [dimensionless] Ki [mM] Km_S [mM] Km_P [mM] |
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Mechanisms UniUniRev |
MassActionBiBiRev
(Validation Errors: 0) J [mM_per_second] S1 [mM] S2 [mM] P1 [mM] P2 [mM] k_f [per_mM_per_second] k_b [per_mM_per_second] |
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Mechanisms BiBiRev |
MassActionBiIrrev
(Validation Errors: 0) J [mM_per_second] S1 [mM] S2 [mM] k_f [per_mM_per_second] |
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Mechanisms BiNullIrrev BiBiIrrev BiUniIrrev |
MassActionBiUniRev
(Validation Errors: 0) J [mM_per_second] S1 [mM] S2 [mM] P [mM] k_f [per_mM_per_second] k_b [per_second] |
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Mechanisms BiUniRev |
MassActionUniBiRev
(Validation Errors: 0) J [mM_per_second] S [mM] P1 [mM] P2 [mM] k_f [per_second] k_b [per_mM_per_second] |
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Mechanisms UniBiRev |
MassActionUniIrrev
(Validation Errors: 0) J [mM_per_second] S [mM] k_f [per_second] |
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Mechanisms UniNullIrrev UniUniIrrev UniBiIrrev |
MassActionUniUniRev
(Validation Errors: 0) J [mM_per_second] S [mM] P [mM] k_f [per_second] k_b [per_second] |
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Mechanisms UniUniRev |
MichaelisMentenIrrev
(Validation Errors: 0) J [mM_per_second] S [mM] V [mM_per_second] Km_S [mM] |
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Mechanisms UniNullIrrev UniUniIrrev UniBiIrrev |
MichaelisMentenRev
(Validation Errors: 0) J [mM_per_second] S [mM] P [mM] V_f [mM_per_second] V_b [mM_per_second] Km_S [mM] Km_P [mM] |
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Mechanisms UniUniRev |
MixedActivationIrrev
(Validation Errors: 0) J [mM_per_second] S [mM] A [mM] V [mM_per_second] Kac [mM] Kas [mM] Km_S [mM] |
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Mechanisms UniUniIrrev_A UniBiIrrev_A UniNullIrrev_A |
MixedActivationRev
(Validation Errors: 0) J [mM_per_second] S [mM] P [mM] A [mM] V_f [mM_per_second] V_b [mM_per_second] Kac [mM] Kas [mM] Km_S [mM] Km_P [mM] |
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Mechanisms UniUniRev_A |
MixedInhibitionIrrev
(Validation Errors: 0) J [mM_per_second] S [mM] I [mM] V [mM_per_second] Kis [mM] Kic [mM] Km_S [mM] |
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Mechanisms UniUniIrrev_I UniBiIrrev_I UniNullIrrev_I |
MixedInhibitionRev
(Validation Errors: 0) J [mM_per_second] S [mM] P [mM] I [mM] V_f [mM_per_second] V_b [mM_per_second] Kis [mM] Kic [mM] Km_S [mM] Km_P [mM] |
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Mechanisms UniUniRev_I |
NoncompetitiveInhibitionIrrev
(Validation Errors: 0) J [mM_per_second] S [mM] V [mM_per_second] Km_S [mM] I [mM] Ki [mM] |
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Mechanisms UniUniIrrev_I UniBiIrrev_I UniNullIrrev_I |
NoncompetitiveInhibitionRev
(Validation Errors: 0) J [mM_per_second] S [mM] P [mM] V_f [mM_per_second] V_b [mM_per_second] Km_S [mM] Km_P [mM] I [mM] Ki [mM] |
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Mechanisms UniUniRev_I |
OrderedBiBi
OrderedBiUni
(Validation Errors: 0) J [mM_per_second] S1 [mM] S2 [mM] P [mM] V_f [mM_per_second] V_b [mM_per_second] Keq [per_mM] Km_S1 [mM] Km_S2 [mM] Km_P [mM] Ki_S1 [mM] |
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Mechanisms BiUniRev |
OrderedUniBi
(Validation Errors: 0) J [mM_per_second] S [mM] P1 [mM] P2 [mM] V_f [mM_per_second] V_b [mM_per_second] Keq [mM] Km_S [mM] Km_P1 [mM] Km_P2 [mM] Ki_P1 [mM] |
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Mechanisms UniBiRev |
PingPongBiBi
SpecificActivationIrrev
(Validation Errors: 0) J [mM_per_second] S [mM] A [mM] V [mM_per_second] Km_S [mM] Km_A [mM] |
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Mechanisms UniUniIrrev_A UniBiIrrev_A UniNullIrrev_A |
SpecificActivationRev
(Validation Errors: 0) J [mM_per_second] S [mM] P [mM] A [mM] V_f [mM_per_second] V_b [mM_per_second] Km_S [mM] Km_P [mM] Km_A [mM] |
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Mechanisms UniUniRev_A |
SubstrateActivationIrrev
(Validation Errors: 0) J [mM_per_second] S [mM] V [mM_per_second] K_sa [mM] K_sc [mM] |
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Mechanisms UniNullIrrev UniUniIrrev UniBiIrrev |
SubstrateInhibitionIrrev
(Validation Errors: 0) J [mM_per_second] S [mM] V [mM_per_second] I [mM] Km_S [mM] Ki [mM] |
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Mechanisms UniNullIrrev UniUniIrrev UniBiIrrev |
SubstrateInhibitionRev
(Validation Errors: 0) J [mM_per_second] S [mM] P [mM] V_f [mM_per_second] V_b [mM_per_second] Km_S [mM] Km_P [mM] Ki [mM] |
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Mechanisms UniUniRev |
UncompetitiveInhibitionIrrev
(Validation Errors: 0) J [mM_per_second] S [mM] V [mM_per_second] I [mM] Km_S [mM] K_I [mM] |
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Mechanisms UniUniIrrev_I UniBiIrrev_I UniNullIrrev_I |