Location: Deterministic Nonperiodic Flow @ c8321a0c3560 / Lorenz_1963_sedml.xml

Author:

Randall Britten <r.britten@auckland.ac.nz>

Date:

2011-09-09 13:29:16+12:00

Desc:

Added description of SED-ML and some figures. Also mentioned OpenCell.

Permanent Source URI:

http://models.cellml.org/w/randall/Lorenz_1963/rawfile/c8321a0c35604ad741c146993945a20baf087223/Lorenz_1963_sedml.xml

<?xml version="1.0" encoding="utf-8"?>
<sedML  xmlns="http://sed-ml.org/" 
       xmlns:math="http://www.w3.org/1998/Math/MathML" level="1" version="1">
 <listOfSimulations>
   <uniformTimeCourse id="simulation1" 
    initialTime="0" outputStartTime="0" outputEndTime="30" 
    numberOfPoints="1000" >
     <algorithm kisaoID="KISAO:0000019"/>
    </uniformTimeCourse>
 </listOfSimulations>
 <listOfModels>
  <model id="model1" name="Lorenz_1963" language="urn:sedml:language:cellml" source="http://models.cellml.org/w/randall/Lorenz_1963/@@rawfile/13da307bb6707a4040d00556202280c13a19a105/Lorenz_1963.cellml"/>
 </listOfModels>
 
  <listOfTasks>
    <task id="task1" name="Phase space trajectory" modelReference="model1" simulationReference="simulation1"/>
  </listOfTasks>
  <listOfDataGenerators>
    <dataGenerator id="t" name="t">
      <listOfVariables>
        <variable id="t" taskReference="task1" target="/cellml:model/cellml:component[@name='Main']/cellml:variable[@name='t']" />
      </listOfVariables>
      <math:math>
        <math:ci>t</math:ci>
      </math:math>
    </dataGenerator>
    
    <dataGenerator id="x" name="x">
      <listOfVariables>
        <variable id="x" taskReference="task1" target="/cellml:model/cellml:component[@name='Main']/cellml:variable[@name='x']" />
      </listOfVariables>
      <math:math>
        <math:ci>x</math:ci>
      </math:math>
    </dataGenerator>
    
    <dataGenerator id="y" name="y">
      <listOfVariables>
        <variable id="y" taskReference="task1" target="/cellml:model/cellml:component[@name='Main']/cellml:variable[@name='y']" />
      </listOfVariables>
      <math:math>
        <math:ci>y</math:ci>
      </math:math>
    </dataGenerator>
  
    <dataGenerator id="z" name="z">
      <listOfVariables>
        <variable id="z" taskReference="task1" target="/cellml:model/cellml:component[@name='Main']/cellml:variable[@name='z']" />
      </listOfVariables>
      <math:math>
        <math:ci>z</math:ci>
      </math:math>
    </dataGenerator>
  </listOfDataGenerators>
  
  <listOfOutputs>
    <plot2D id="plot1" name="Phase space trajectory xy">
      <listOfCurves>
        <curve id="c1" logX="false" logY="false" xDataReference="x" yDataReference="y" />
      </listOfCurves>
    </plot2D>

    <plot2D id="plot2" name="Phase space trajectory xz">
      <listOfCurves>
        <curve id="c1" logX="false" logY="false" xDataReference="x" yDataReference="z" />
      </listOfCurves>
    </plot2D>

    <plot2D id="plot3" name="Phase space trajectory yz">
      <listOfCurves>
        <curve id="c1" logX="false" logY="false" xDataReference="y" yDataReference="z" />
      </listOfCurves>
    </plot2D>

    <plot2D id="plot4" name="Timeseries">
      <listOfCurves>
        <curve id="c1" logX="false" logY="false" xDataReference="t" yDataReference="x" />
        <curve id="c2" logX="false" logY="false" xDataReference="t" yDataReference="y" />
        <curve id="c3" logX="false" logY="false" xDataReference="t" yDataReference="z" />
      </listOfCurves>
    </plot2D>
    
  </listOfOutputs>
</sedML>