| 2023-04-27 |
David Nickerson |
Updates to get things working with OpenCOR 0.7.1
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[files]
[tgz]
[zip] |
Cardiac Cellular Electrophysiological Modelling |
| 2021-09-17 |
David Nickerson |
tweak html formatting
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[files]
[tgz]
[zip] |
Cardiac Cellular Electrophysiological Modelling |
| 2021-09-17 |
David Nickerson |
tweak html formatting
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[files]
[tgz]
[zip] |
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| 2021-09-17 |
David Nickerson |
tweak html formatting
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[files]
[tgz]
[zip] |
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| 2021-09-17 |
David Nickerson |
updating documentation in prepraration for making an exposure.
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[files]
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| 2021-09-17 |
David Nickerson |
new approach to documenting the jupyter notebook for an exposure on PMR
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[files]
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| 2021-09-16 |
David Nickerson |
adding preliminary exposure doc page
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[files]
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| 2021-09-16 |
David Nickerson |
adding final jupyter notebook and an HTML export
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[files]
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| 2021-09-16 |
David Nickerson |
update jupyter notebook with TNNP simulation experiments
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[files]
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| 2021-09-16 |
David Nickerson |
Updating TNNP model periodic stimulus simulation experiments:
* exposing the membrane potential at the top-level;
* adding SED-ML.
Using OpenCOR Snapshot Release 2021-09-14.
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[files]
[tgz]
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| 2021-09-16 |
David Nickerson |
adding SED-ML for LRd, JRW, and N98 models and adding them to the jupyter notebook
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[files]
[tgz]
[zip] |
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| 2021-09-16 |
David Nickerson |
adding SED-ML for LRd, JRW, and N98 models and adding them to the jupyter notebook
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[files]
[tgz]
[zip] |
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| 2021-09-16 |
David Nickerson |
updating jupyter notebook with LR 1991 figure
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[files]
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| 2021-09-16 |
David Nickerson |
Updating Luo & Rudy 1991 model:
* exposing membrane potential and time variables at top-level;
* adding SED-ML for each of the [K]o simulations.
Using OpenCOR snapshot release 2021-09-14
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[files]
[tgz]
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| 2021-09-16 |
David Nickerson |
update to jupyter notebook
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[files]
[tgz]
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| 2021-09-16 |
David Nickerson |
Upadte jupyter notebook with MNT and DFN comparison figure
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[files]
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[zip] |
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| 2021-09-16 |
David Nickerson |
adding SED-ML for DFN model
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[files]
[tgz]
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| 2021-09-16 |
David Nickerson |
update MNT model:
* exposing membrane potential at the top level;
* adding SED-ML;
Using OpenCOR snapshot release 2021-09-14
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[files]
[tgz]
[zip] |
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| 2021-09-16 |
David Nickerson |
adding BR variant comparison to jupyter notebook
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[files]
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| 2021-09-16 |
David Nickerson |
updating variants of BR model and adding SED-ML
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[files]
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| 2021-09-16 |
David Nickerson |
adding Noble 1962 comparison to the jupyter notebook
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[files]
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| 2021-09-16 |
David Nickerson |
Updating Noble 1962 model:
* Exposing the membrane potential to the top-level model;
* adding SED-ML for the paced and pacemaker variants of the model.
Using OpenCOR Snapshot release 2021-09-14.
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[files]
[tgz]
[zip] |
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| 2021-09-15 |
David Nickerson |
Update jupyter notebook with FK-BR comparison to original BR model
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[files]
[tgz]
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| 2021-09-15 |
David Nickerson |
Updating BR model with SED-ML for the default periodic stimulus simulation experinment
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[files]
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| 2021-09-15 |
David Nickerson |
update jupyter notebook with FK model results
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[files]
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| 2021-09-15 |
David Nickerson |
Update Fenton & Karma model:
* Adding membrane potential and time to the top-level output variables;
* Adding SED-ML for each of the simulation experiments for the variants of the model.
Using OpenCOR snapshot release 2021-09-14.
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[files]
[tgz]
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| 2021-09-15 |
David Nickerson |
adding ignore file to ignore the jupyter checkpoints
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[files]
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| 2021-09-15 |
David Nickerson |
adding initial Jupyter notebook for cardiac cellular electrophysiology book chapter
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| 2021-09-15 |
David Nickerson |
Updates to Aliev and Panfilov model:
* Make sure model is valid OpenCOR CellML Text format;
* Make sure model is valid CellML;
* Add SED-ML for single stimulus experiment.
Using OpenCOR snapshot 2021-09-14
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[files]
[tgz]
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| 2021-09-15 |
David Nickerson |
Updates to Rogers and McCulloch model:
* Make sure model is valid OpenCOR CellML Text format;
* Make sure model is valid CellML;
* Add SED-ML for single stimulus experiment.
Using OpenCOR snapshot 2021-09-14
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[files]
[tgz]
[zip] |
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| 2021-09-15 |
David Nickerson |
Updates to FHN model:
* Make sure model is valid OpenCOR CellML Text format;
* Make sure model is valid CellML;
* Add SED-ML for single stimulus experiment.
Using OpenCOR snapshot 2021-09-14
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[files]
[tgz]
[zip] |
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| 2011-06-21 |
David Nickerson |
adding a standalone version of the SED-ML document for this example, updating to pass validation using Frank's new web tools
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[files]
[tgz]
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| 2010-07-06 |
David Nickerson |
correcting errors found with newer versions of the CellML API: e-notation; namespace; and an initial value is required for state variables. The initial value on x1 fixes the problem reported on tracker item 2521
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| 2010-07-06 |
David Nickerson |
removing duplicated connection picked up while working on tracker item 2521
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| 2010-05-04 |
David Nickerson |
finishing off initial draft SED-ML version of graphing and simulation description. Still doesn't validate in libsedml but looking into this with Frank Bergmann
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| 2010-05-04 |
David Nickerson |
adding initial version of SED-ML L1V1 file reproducing what is in graphs/BR-INa-variants.xml
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[files]
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| 2010-05-04 |
David Nickerson |
adding V to the top level model in order to test out SED-ML L1V1 since need to be able to address variables using xpath
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[files]
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| 2009-07-16 |
David Nickerson |
typos
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| 2009-07-16 |
David Nickerson |
adding my initial description of the IUPS 2009 tutorial
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| 2009-07-16 |
David Nickerson |
the starting point for the HH tutorial example
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[files]
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| 2009-07-16 |
David Nickerson |
copying the finished experiment model to start work on a semi-complete version for the tutorial participants to complete
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[files]
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| 2009-07-13 |
David Nickerson |
adding a sketch of the modified HH-N62 model structure
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[files]
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| 2009-07-13 |
David Nickerson |
adding initial sketch of base HH model
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[files]
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| 2009-07-08 |
David Nickerson |
update web page to point to the current revision of the generated content
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[files]
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| 2009-07-08 |
David Nickerson |
adding generated content for the current version of the IUPS tutorial description
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[files]
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| 2009-07-08 |
David Nickerson |
adding models for the S1S2 stimulus applied to the TNNP model and extending the tutorial description for the complete list of simulations, at present
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[files]
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| 2009-07-07 |
David Nickerson |
renaming files in order to move to a single reference description for the entire tutorial
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[files]
[tgz]
[zip] |
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| 2009-07-07 |
David Nickerson |
update to point to the lastest generated content
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[files]
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| 2009-07-07 |
David Nickerson |
adding the generated content for the next iteration of the reference description
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[files]
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| 2009-07-07 |
David Nickerson |
update for modified HH graphs in tutorial description
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[files]
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